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Snoeijs Leijonmalm, PaulineORCID iD iconorcid.org/0000-0002-4544-2668
Alternative names
Publications (10 of 44) Show all publications
Maes, S. M., Verheye, M. L., Bouchard, C., Geslain, E., Hellemans, B., Johansen, T., . . . Flores, H. (2025). Reduced-Representation Sequencing Detects Trans-Arctic Connectivity and Local Adaptation in Polar Cod (Boreogadus saida). Molecular Ecology, 34(7), Article ID e17706.
Open this publication in new window or tab >>Reduced-Representation Sequencing Detects Trans-Arctic Connectivity and Local Adaptation in Polar Cod (Boreogadus saida)
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2025 (English)In: Molecular Ecology, ISSN 0962-1083, E-ISSN 1365-294X, Vol. 34, no 7, article id e17706Article in journal (Refereed) Published
Abstract [en]

Information on connectivity and genetic structure of marine organisms remains sparse in frontier ecosystems such as the Arctic Ocean. Filling these knowledge gaps becomes increasingly urgent, as the Arctic is undergoing rapid physical, ecological and socio-economic changes. The abundant and widely distributed polar cod (Boreogadus saida) is highly adapted to Arctic waters, and its larvae and juveniles live in close association with sea ice. Through a reduced-representation sequencing approach, this study explored the spatial genetic structure of polar cod at a circum-Arctic scale. Genomic variation was partitioned into neutral and adaptive components to respectively investigate genetic connectivity and local adaptation. Based on 922 high-quality single nucleotide polymorphism (SNP) markers genotyped in 611 polar cod, broad-scale differentiation was detected among three groups: (i) Beaufort –Chukchi seas, (ii) all regions connected by the Transpolar Drift, ranging from the Laptev Sea to Iceland, including the European Arctic and (iii) West Greenland. Patterns of neutral genetic structure suggested broadscale oceanographic and sea ice drift features (i.e., Beaufort Gyre and Transpolar Drift) as important drivers of connectivity. Genomic variation at 35 outlier loci indicated adaptive divergence of the West Greenland and the Beaufort–Chukchi Seas populations, possibly driven by environmental conditions. Sea ice decline and changing ocean currents can alter or disrupt connectivity between polar cod from the three genetic groups, potentially undermining their resilience to climate change, even in putative refugia, such as the Central Arctic Ocean and the Arctic Archipelago.

Keywords
Arctic Ocean, fish, Gadidae, polar cod, population genomics, sea ice, seascape, single nucleotide polymorphism
National Category
Ecology
Identifiers
urn:nbn:se:su:diva-242559 (URN)10.1111/mec.17706 (DOI)001438036800001 ()40040553 (PubMedID)2-s2.0-105001071187 (Scopus ID)
Available from: 2025-05-05 Created: 2025-05-05 Last updated: 2025-05-05Bibliographically approved
Schaafsma, F. L., Flores, H., David, C. L., Castellani, G., Sakinan, S., Meijboom, A., . . . Ashjian, C. J. (2024). Insights into the diet and feeding behavior of immature polar cod (Boreogadus saida) from the under-ice habitat of the central Arctic Ocean. Journal of Fish Biology, 105(3), 907-930
Open this publication in new window or tab >>Insights into the diet and feeding behavior of immature polar cod (Boreogadus saida) from the under-ice habitat of the central Arctic Ocean
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2024 (English)In: Journal of Fish Biology, ISSN 0022-1112, E-ISSN 1095-8649, Vol. 105, no 3, p. 907-930Article in journal (Refereed) Published
Abstract [en]

Polar cod (Boreogadus saida) is an endemic key species of the Arctic Ocean ecosystem. The ecology of this forage fish is well studied in Arctic shelf habitats where a large part of its population lives. However, knowledge about its ecology in the central Arctic Ocean (CAO), including its use of the sea-ice habitat, is hitherto very limited. To increase this knowledge, samples were collected at the under-ice surface during several expeditions to the CAO between 2012 and 2020, including the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. The diet of immature B. saida and the taxonomic composition of their potential prey were analysed, showing that both sympagic and pelagic species were important prey items. Stomach contents included expected prey such as copepods and amphipods. Surprisingly, more rarely observed prey such as appendicularians, chaetognaths, and euphausiids were also found to be important. Comparisons of the fish stomach contents with prey distribution data suggests opportunistic feeding. However, relative prey density and catchability are important factors that determine which type of prey is ingested. Prey that ensures limited energy expenditure on hunting and feeding is often found in the stomach contents even though it is not the dominant species present in the environment. To investigate the importance of prey quality and quantity for the growth of B. saida in this area, we measured energy content of dominant prey species and used a bioenergetic model to quantify the effect of variations in diet on growth rate potential. The modeling results suggest that diet variability was largely explained by stomach fullness and, to a lesser degree, the energetic content of the prey. Our results suggest that under climate change, immature B. saida may be at least equally sensitive to a loss in the number of efficiently hunted prey than to a reduction in the prey's energy content. Consequences for the growth and survival of B. saida will not depend on prey presence alone, but also on prey catchability, digestibility, and energy content.

Keywords
Arctic cod, bioenergetics, central Arctic Ocean, sea-ice habitat, stomach content, zooplankton
National Category
Ecology
Identifiers
urn:nbn:se:su:diva-235553 (URN)10.1111/jfb.15836 (DOI)001254042800001 ()38922867 (PubMedID)2-s2.0-85196742573 (Scopus ID)
Available from: 2024-11-25 Created: 2024-11-25 Last updated: 2024-11-25Bibliographically approved
Jakobsson, M., Mohammad, R., Karlsson, M., Salas Romero, S., Vacek, F., Heinze, F., . . . Mayer, L. (2024). The International Bathymetric Chart of the Arctic Ocean Version 5.0. Scientific Data, 11, Article ID 1420.
Open this publication in new window or tab >>The International Bathymetric Chart of the Arctic Ocean Version 5.0
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2024 (English)In: Scientific Data, E-ISSN 2052-4463, Vol. 11, article id 1420Article in journal (Refereed) Published
Abstract [en]

Knowledge about seafloor depth, or bathymetry, is crucial for various marine activities, including scientific research, offshore industry, safety of navigation, and ocean exploration. Mapping the central Arctic Ocean is challenging due to the presence of perennial sea ice, which limits data collection to icebreakers, submarines, and drifting ice stations. The International Bathymetric Chart of the Arctic Ocean (IBCAO) was initiated in 1997 with the goal of updating the Arctic Ocean bathymetric portrayal. The project team has since released four versions, each improving resolution and accuracy. Here, we present IBCAO Version 5.0, which offers a resolution four times as high as Version 4.0, with 100 × 100 m grid cells compared to 200 × 200 m. Over 25% of the Arctic Ocean is now mapped with individual depth soundings, based on a criterion that considers water depth. Version 5.0 also represents significant advancements in data compilation and computing techniques. Despite these improvements, challenges such as sea-ice cover and political dynamics still hinder comprehensive mapping.

National Category
Oceanography, Hydrology and Water Resources
Identifiers
urn:nbn:se:su:diva-240682 (URN)10.1038/s41597-024-04278-w (DOI)001381244400003 ()39709502 (PubMedID)2-s2.0-85212786058 (Scopus ID)
Available from: 2025-03-13 Created: 2025-03-13 Last updated: 2025-03-13Bibliographically approved
Snoeijs-Leijonmalm, P., Flores, H., Sakinan, S., Thorvaldsson, B., Hildebrandt, N., Chawarski, J., . . . Muchowski, J. (2022). Ecosystem mapping in the Central Arctic Ocean (CAO) during the SAS-Oden expedition: Final report. Brussels: European Commission
Open this publication in new window or tab >>Ecosystem mapping in the Central Arctic Ocean (CAO) during the SAS-Oden expedition: Final report
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2022 (English)Report (Other academic)
Abstract [en]

As a result of global warming, the marine ecosystem around the North Pole, the Central Arctic Ocean (CAO), is in fast transition from a permanently to a seasonally ice-covered ocean. The sea-ice loss is expected to enable summer access to the CAO for non-icebreaking ships, including fishery vessels, in the near future. However, the lack of knowledge on the CAO ecosystem impedes any assessment of the sustainability of potential future fisheries in the CAO. Taking a precautionary approach, the EU and nine countries in October 2018 signed the Agreement to Prevent Unregulated High Seas Fisheries in the Central Arctic Ocean. This agreement entered into force in June 2021 and a.o. requires the establishment of a joint scientific program to improve the understanding of the CAO ecosystem, including mapping and monitoring. To reduce the existing lack of knowledge, 12 scientists from the EFICA Consortium participated, together with 26 other on-board scientists, in sampling and data collection of ecosystem data during the Swedish SAS-Oden expedition in summer 2021. This report describes the field work performed by the EFICA scientists using water-column acoustics, deep-sea optical observations, and fish, zooplankton, sediment otolith and eDNA sampling for targeting fish, zooplankton and mammals. Further ecosystem data (physical, chemical and biological) were collected by the EFICA scientists in collaboration with other scientists on-board. Together with this report, a metadata database containing lists of all collected samples and data that are relevant for future fish-stock modelling and assessment studies was delivered to the European Commission.

Place, publisher, year, edition, pages
Brussels: European Commission, 2022. p. 90
National Category
Earth and Related Environmental Sciences
Identifiers
urn:nbn:se:su:diva-214082 (URN)10.2826/958629 (DOI)978-92-9469-218-4 (ISBN)
Available from: 2023-01-23 Created: 2023-01-23 Last updated: 2025-02-07Bibliographically approved
Snoeijs-leijonmalm, P. & SAS-Oden 2021 Scientific Party, . (2022). Expedition Report SWEDARCTIC Synoptic Arctic Survey 2021 with icebreaker Oden. Luleå: Swedish Polar Research Secretariat
Open this publication in new window or tab >>Expedition Report SWEDARCTIC Synoptic Arctic Survey 2021 with icebreaker Oden
2022 (English)Report (Other academic)
Place, publisher, year, edition, pages
Luleå: Swedish Polar Research Secretariat, 2022. p. 300
National Category
Earth and Related Environmental Sciences Biological Sciences
Identifiers
urn:nbn:se:su:diva-214007 (URN)978-91-519-3672-7 (ISBN)
Available from: 2023-01-20 Created: 2023-01-20 Last updated: 2025-01-31Bibliographically approved
Skjoldal, H. R., Gjøsæter, H., Flores, H., Hop, H., Lunsford, C. & Snoeijs-Leijonmalm, P. (2022). Fish. In: Hein Rune Skjoldal (Ed.), Ecosystem Assessment of the Central Arctic Ocean: Description of the Ecosystem (pp. 129-130). Brussels: International Council for the Exploration of the Sea
Open this publication in new window or tab >>Fish
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2022 (English)In: Ecosystem Assessment of the Central Arctic Ocean: Description of the Ecosystem / [ed] Hein Rune Skjoldal, Brussels: International Council for the Exploration of the Sea , 2022, p. 129-130Chapter in book (Refereed)
Place, publisher, year, edition, pages
Brussels: International Council for the Exploration of the Sea, 2022
Series
ICES cooperative research report, ISSN 2707-7144 ; 355
National Category
Biological Sciences
Identifiers
urn:nbn:se:su:diva-214086 (URN)10.17895/ices.pub.20191787 (DOI)978-87-7482-973-7 (ISBN)
Note

DOI för hela boken: 10.17895/ices.pub.20191787.

Available from: 2023-01-23 Created: 2023-01-23 Last updated: 2024-10-10Bibliographically approved
Chamberlain, E. J., Balmonte, J. P., Torstensson, A., Fong, A. A., Snoeijs-Leijonmalm, P. & Bowman, J. S. (2022). Impacts of sea ice melting procedures on measurements of microbial community structure. Elementa: Science of the Anthropocene, 10(1), Article ID 00017.
Open this publication in new window or tab >>Impacts of sea ice melting procedures on measurements of microbial community structure
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2022 (English)In: Elementa: Science of the Anthropocene, E-ISSN 2325-1026, Vol. 10, no 1, article id 00017Article in journal (Refereed) Published
Abstract [en]

Microorganisms play critical roles in sea ice biogeochemical processes. However, microbes living within sea ice can be challenging to sample for scientific study. Because most techniques for microbial analysis are optimized for liquid samples, sea ice samples are typically melted first, often applying a buffering method to mitigate osmotic lysis. Here, we tested commonly used melting procedures on three different ice horizons of springtime, first year, land-fast Arctic sea ice to investigate potential methodological impacts on resulting measurements of cell abundance, photophysiology, and microbial community structure as determined by 16S and 18S rRNA gene amplicon sequencing. Specifically, we compared two buffering methods using NaCl solutions (“seawater,” melting the ice in an equal volume of 35-ppt solution, and “isohaline,” melting with a small volume of 250-ppt solution calculated to yield meltwater at estimated in situ brine salinity) to direct ice melting (no buffer addition) on both mechanically “shaved” and “non-shaved” samples. Shaving the ice shortened the melting process, with no significant impacts on the resulting measurements. The seawater buffer was best at minimizing cell lysis for this ice type, retaining the highest number of cells and chlorophyll a concentration. Comparative measurements of bacterial (16S) community structure highlighted ecologically relevant subsets of the community that were significantly more abundant in the buffered samples. The results for eukaryotic (18S) community structure were less conclusive. Taken together, our results suggest that an equivalent-volume seawater-salinity buffered melt is best at minimizing cell loss due to osmotic stress for springtime Arctic sea ice, but that either buffer will reduce bias in community composition when compared to direct melting. Overall, these findings indicate potential methodological biases that should be considered before developing a sea ice melting protocol for microbiological studies and afterwards, when interpreting biogeochemical or ecological meaning of the results. 

Keywords
Sea ice, Microbial communities, Methods, Ice melt, Polar science
National Category
Earth and Related Environmental Sciences Biological Sciences
Identifiers
urn:nbn:se:su:diva-215186 (URN)10.1525/elementa.2022.00017 (DOI)000922380100001 ()2-s2.0-85145489094 (Scopus ID)
Available from: 2023-03-01 Created: 2023-03-01 Last updated: 2025-01-31Bibliographically approved
Mock, T., Boulton, W., Balmonte, J.-P., Barry, K., Bertilsson, S., Bowman, J., . . . Metfies, K. (2022). Multiomics in the central Arctic Ocean for benchmarking biodiversity change. PLoS biology, 20(10), Article ID e3001835.
Open this publication in new window or tab >>Multiomics in the central Arctic Ocean for benchmarking biodiversity change
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2022 (English)In: PLoS biology, ISSN 1544-9173, E-ISSN 1545-7885, Vol. 20, no 10, article id e3001835Article in journal (Refereed) Published
Abstract [en]

Multiomics approaches need to be applied in the central Arctic Ocean to benchmark biodiversity change and to identify novel species and their genes. As part of MOSAiC, EcoOmics will therefore be essential for conservation and sustainable bioprospecting in one of the least explored ecosystems on Earth.

National Category
Earth and Related Environmental Sciences Biological Sciences
Identifiers
urn:nbn:se:su:diva-211848 (URN)10.1371/journal.pbio.3001835 (DOI)36251644 (PubMedID)2-s2.0-85140271616 (Scopus ID)
Available from: 2022-11-28 Created: 2022-11-28 Last updated: 2025-01-31Bibliographically approved
Snoeijs-Leijonmalm, P. (2022). Sympagic and pelagic bacterial communities. In: Hein Rune Skjoldal (Ed.), Ecosystem Assessment of the Central Arctic Ocean: Description of the Ecosystem (pp. 123-125). Copenhagen: International Council for the Exploration of the Sea
Open this publication in new window or tab >>Sympagic and pelagic bacterial communities
2022 (English)In: Ecosystem Assessment of the Central Arctic Ocean: Description of the Ecosystem / [ed] Hein Rune Skjoldal, Copenhagen: International Council for the Exploration of the Sea , 2022, p. 123-125Chapter in book (Refereed)
Place, publisher, year, edition, pages
Copenhagen: International Council for the Exploration of the Sea, 2022
Series
ICES cooperative research report, ISSN 2707-7144 ; 355
National Category
Biological Sciences
Identifiers
urn:nbn:se:su:diva-214084 (URN)10.17895/ices.pub.20191787 (DOI)978-87-7482-973-7 (ISBN)
Note

DOI för hela boken: 10.17895/ices.pub.20191787.

Available from: 2023-01-23 Created: 2023-01-23 Last updated: 2024-10-10Bibliographically approved
Snoeijs-Leijonmalm, P., Flores, H., Sakinan, S., Hildebrandt, N., Svenson, A., Castellani, G., . . . Engelmann, R. (2022). Unexpected fish and squid in the central Arctic deep scattering layer. Science Advances, 8(7), Article ID eabj7536.
Open this publication in new window or tab >>Unexpected fish and squid in the central Arctic deep scattering layer
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2022 (English)In: Science Advances, E-ISSN 2375-2548, Vol. 8, no 7, article id eabj7536Article in journal (Refereed) Published
Abstract [en]

The retreating ice cover of the Central Arctic Ocean (CAO) fuels speculations on future fisheries. However, very little is known about the existence of harvestable fish stocks in this 3.3 million–square kilometer ecosystem around the North Pole. Crossing the Eurasian Basin, we documented an uninterrupted 3170-kilometer-long deep scattering layer (DSL) with zooplankton and small fish in the Atlantic water layer at 100- to 500-meter depth. Diel vertical migration of this central Arctic DSL was lacking most of the year when daily light variation was absent. Unexpectedly, the DSL also contained low abundances of Atlantic cod, along with lanternfish, armhook squid, and Arctic endemic ice cod. The Atlantic cod originated from Norwegian spawning grounds and had lived in Arctic water temperature for up to 6 years. The potential fish abundance was far below commercially sustainable levels and is expected to remain so because of the low productivity of the CAO. 

National Category
Biological Sciences
Identifiers
urn:nbn:se:su:diva-203135 (URN)10.1126/sciadv.abj7536 (DOI)000760189000013 ()35179965 (PubMedID)2-s2.0-85124933800 (Scopus ID)
Available from: 2022-03-23 Created: 2022-03-23 Last updated: 2022-03-23Bibliographically approved
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ORCID iD: ORCID iD iconorcid.org/0000-0002-4544-2668

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