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Bull, J. N., Buntine, J. T., Carrascosa, E., Stockett, M. H. & Bieske, E. J. (2021). Action spectroscopy of deprotomer-selected hydroxycinnamate anions. European Physical Journal D: Atomic, Molecular and Optical Physics, 75(2), Article ID 67.
Open this publication in new window or tab >>Action spectroscopy of deprotomer-selected hydroxycinnamate anions
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2021 (English)In: European Physical Journal D: Atomic, Molecular and Optical Physics, ISSN 1434-6060, E-ISSN 1434-6079, Vol. 75, no 2, article id 67Article in journal (Refereed) Published
Abstract [en]

Tandem ion mobility mass spectrometry-coupled laser excitation is used to record photodetachment, photoisomerization and photodepletion action spectra for a series of deprotomer-selected hydroxycinnamate anions, including deprotonated caffeic, ferulic and sinapinic acids. This molecular series accounts for most hydroxycinnainic moieties found in nature. Phenoxide deprotomers for para and ortho structural isomers have similar photodetachment action spectra that span the 350-460nm range with the maximum response occurring between 420 and 440 nm. None of the phenoxide deprotomers showed evidence for E -> Z photoisomerization. In contrast, photoexcitation of the carboxylate deprotomers of caffeic and ferulic acids and the meta-phenoxide deprotomer of caffeic acid initiates intramolecular proton transfer to give the para-phenoxide deprotomer. Photoexcitation of the carboxylate deprotomer of sinapinic acid and ortho-coumaric acid does not result in intramolecular proton transfer, presumably due to substantial barriers for rearrangement. For deprotonated meta-coumaric acid, interconversion between the phenoxide and carboxylate deprotomers occurs in the ion mobility spectrometer drift region where the effective ion temperature is T-eff approximate to 299 K.

National Category
Physical Sciences
Identifiers
urn:nbn:se:su:diva-192335 (URN)10.1140/epjd/s10053-021-00070-2 (DOI)000623655200001 ()2-s2.0-85101574898 (Scopus ID)
Available from: 2021-04-19 Created: 2021-04-19 Last updated: 2022-11-10Bibliographically approved
Coughlan, N. J. A., Stockett, M. H., Kjær, C., Ashworth, E. K., Bulman Page, P. C., Meech, S. R., . . . Bull, J. N. (2021). Action spectroscopy of the isolated red Kaede fluorescent protein chromophore. Journal of Chemical Physics, 155(12), Article ID 124304.
Open this publication in new window or tab >>Action spectroscopy of the isolated red Kaede fluorescent protein chromophore
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2021 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 155, no 12, article id 124304Article in journal (Refereed) Published
Abstract [en]

Incorporation of fluorescent proteins into biochemical systems has revolutionized the field of bioimaging. In a bottom-up approach, understanding the photophysics of fluorescent proteins requires detailed investigations of the light-absorbing chromophore, which can be achieved by studying the chromophore in isolation. This paper reports a photodissociation action spectroscopy study on the deprotonated anion of the red Kaede fluorescent protein chromophore, demonstrating that at least three isomers–assigned to deprotomers–are generated in the gas phase. Deprotomer-selected action spectra are recorded over the S1 ← S0 band using an instrument with differential mobility spectrometry coupled with photodissociation spectroscopy. The spectrum for the principal phenoxide deprotomer spans the 480–660 nm range with a maximum response at ≈610 nm. The imidazolate deprotomer has a blue-shifted action spectrum with a maximum response at ≈545 nm. The action spectra are consistent with excited state coupled-cluster calculations of excitation wavelengths for the deprotomers. A third gas-phase species with a distinct action spectrum is tentatively assigned to an imidazole tautomer of the principal phenoxide deprotomer. This study highlights the need for isomer-selective methods when studying the photophysics of biochromophores possessing several deprotonation sites.

National Category
Physical Sciences
Identifiers
urn:nbn:se:su:diva-200948 (URN)10.1063/5.0063258 (DOI)000729369100004 ()34598549 (PubMedID)2-s2.0-85116037721 (Scopus ID)
Available from: 2022-01-24 Created: 2022-01-24 Last updated: 2022-11-10Bibliographically approved
Bull, J. N., Anstöter, C. S., Stockett, M. H., Clarke, C. J., Gibbard, J. A., Bieske, E. J. & Verlet, J. R. R. (2021). Nonadiabatic Dynamics between Valence, Nonvalence, and Continuum Electronic States in a Heteropolycyclic Aromatic Hydrocarbon. The Journal of Physical Chemistry Letters, 12(49), 11811-11816
Open this publication in new window or tab >>Nonadiabatic Dynamics between Valence, Nonvalence, and Continuum Electronic States in a Heteropolycyclic Aromatic Hydrocarbon
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2021 (English)In: The Journal of Physical Chemistry Letters, E-ISSN 1948-7185, Vol. 12, no 49, p. 11811-11816Article in journal (Refereed) Published
Abstract [en]

Internal conversion between valence-localized and dipole-bound states is thought to be a ubiquitous process in polar molecular anions, yet there is limited direct evidence. Here, photodetachment action spectroscopy and time-resolved photoelectron imaging with a heteropolycyclic aromatic hydrocarbon (hetero-PAH) anion, deprotonated 1-pyrenol, is used to demonstrate a subpicosecond (τ1 = 160 ± 20 fs) valence to dipole-bound state internal conversion following excitation of the origin transition of the first valence-localized excited state. The internal conversion dynamics are evident in the photoelectron spectra and in the photoelectron angular distributions (β2 values) as the electronic character of the excited state population changes from valence to nonvalence. The dipole-bound state subsequently decays through mode-specific vibrational autodetachment with a lifetime τ2 = 11 ± 2 ps. These internal conversion and autodetachment dynamics are likely common in molecular anions but difficult to fingerprint due to the transient existence of the dipole-bound state. Potential implications of the present excited state dynamics for interstellar hetero-PAH anion formation are discussed.

National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-202289 (URN)10.1021/acs.jpclett.1c03532 (DOI)000753950900009 ()34870432 (PubMedID)2-s2.0-85121291361 (Scopus ID)
Available from: 2022-02-22 Created: 2022-02-22 Last updated: 2024-07-04Bibliographically approved
Giacomozzi, L., Kjær, C., Brøndsted Nielsen, S., Ashworth, E. K., Bull, J. N. & Stockett, M. H. (2021). Non-statistical fragmentation in photo-activated flavin mononucleotide anions. Journal of Chemical Physics, 155(4), Article ID 044305.
Open this publication in new window or tab >>Non-statistical fragmentation in photo-activated flavin mononucleotide anions
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2021 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 155, no 4, article id 044305Article in journal (Refereed) Published
Abstract [en]

The spectroscopy and photo-induced dissociation of flavin mononucleotide anions in vacuo are investigated over the 300-500 nm wavelength range. Comparison of the dependence of fragment ion yields as a function of deposited photon energy with calculated dissociation energies and collision-induced dissociation measurements performed under single-collision conditions suggests that a substantial fraction of photo-activated ions decompose through non-statistical fragmentation pathways. Among these pathways is the dominant photo-induced fragmentation channel, the loss of a fragment identified as formylmethylflavin. The fragment ion specific action spectra reveal electronic transition energies close to those for flavins in solution and previously published gas-phase measurements, although the photo-fragment yield upon excitation of the S-2 <- S-0 transition appears to be suppressed.

Keywords
Action spectroscopy, Collision-induced dissociation, Mass spectrometry, Photo-isomerization, Absorption spectroscopy, Gas phase, Heterocyclic compounds, Dissociation energy
National Category
Physical Sciences
Identifiers
urn:nbn:se:su:diva-197694 (URN)10.1063/5.0056415 (DOI)000692375500003 ()34340366 (PubMedID)2-s2.0-85111303158 (Scopus ID)
Available from: 2021-10-14 Created: 2021-10-14 Last updated: 2022-11-11Bibliographically approved
Zettergren, H., Domaracka, A., Schlathölter, T., Bolognesi, P., Díaz-Tendero, S., Łabuda, M., . . . Petrignani, A. (2021). Roadmap on dynamics of molecules and clusters in the gas phase. European Physical Journal D: Atomic, Molecular and Optical Physics, 75(5), Article ID 152.
Open this publication in new window or tab >>Roadmap on dynamics of molecules and clusters in the gas phase
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2021 (English)In: European Physical Journal D: Atomic, Molecular and Optical Physics, ISSN 1434-6060, E-ISSN 1434-6079, Vol. 75, no 5, article id 152Article, review/survey (Refereed) Published
Abstract [en]

This roadmap article highlights recent advances, challenges and future prospects in studies of the dynamics of molecules and clusters in the gas phase. It comprises nineteen contributions by scientists with leading expertise in complementary experimental and theoretical techniques to probe the dynamics on timescales spanning twenty order of magnitudes, from attoseconds to minutes and beyond, and for systems ranging in complexity from the smallest (diatomic) molecules to clusters and nanoparticles. Combining some of these techniques opens up new avenues to unravel hitherto unexplored reaction pathways and mechanisms, and to establish their significance in, e.g. radiotherapy and radiation damage on the nanoscale, astrophysics, astrochemistry and atmospheric science.

National Category
Physical Sciences
Identifiers
urn:nbn:se:su:diva-198414 (URN)10.1140/epjd/s10053-021-00155-y (DOI)000692820200001 ()
Available from: 2021-11-08 Created: 2021-11-08 Last updated: 2022-02-25Bibliographically approved
Stockett, M. H., Kjaer, C., Daly, S., Bieske, E. J., Verlet, J. R. R., Brondsted Nielsen, S. & Bull, J. N. (2020). Photophysics of Isolated Rose Bengal Anions. Journal of Physical Chemistry A, 124(41), 8429-8438
Open this publication in new window or tab >>Photophysics of Isolated Rose Bengal Anions
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2020 (English)In: Journal of Physical Chemistry A, ISSN 1089-5639, E-ISSN 1520-5215, Vol. 124, no 41, p. 8429-8438Article in journal (Refereed) Published
Abstract [en]

Dye molecules based on the xanthene moiety are widely used as fluorescent probes in bioimaging and technological applications due to their large absorption cross-section for visible light and high fluorescence quantum yield. These applications require a clear understanding of the dye's inherent photophysics and the effect of a condensed-phase environment. Here, the gas-phase photophysics of the rose bengal doubly deprotonated dianion [RB - 2H](2-), deprotonated monoanion [RB - H](-), and doubly deprotonated radical anion [RB - 2H](center dot-) is investigated using photodetachment, photoelectron, and dispersed fluorescence action spectroscopies, and tandem ion mobility spectrometry (IMS) coupled with laser excitation. For [RB - 2H](2-), photodetachment action spectroscopy reveals a clear band in the visible (450-580 nm) with vibronic structure. Electron affinity and repulsive Coulomb barrier (RCB) properties of the dianion are characterized using frequency-resolved photoelectron spectroscopy, revealing a decreased RCB compared with that of fluorescein dianions due to electron delocalization over halogen atoms. Monoanions [RB - H](-) and [RB 2H](center dot-) differ in nominal mass by 1 Da but are difficult to study individually using action spectroscopies that isolate target ions using low-resolution mass spectrometry. This work shows that the two monoanions are readily distinguished and probed using the IMSphoto-IMS and photo-IMS-photo-IMS strategies, providing distinct but overlapping photodissociation action spectra in the visible spectral range. Gas-phase fluorescence was not detected from photoexcited [RB - 2H](2-) due to rapid electron ejection. However, both [RB - H](-) and [RB - 2H](center dot-) show a weak fluorescence signal. The [RB - H](-) action spectra show a large Stokes shift of similar to 1700cm(-1), while the [RB - 2H](center dot-) action spectra show no appreciable Stokes shift. This difference is explained by considering geometries of the ground and fluorescing states.

National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-188241 (URN)10.1021/acs.jpca.0c07123 (DOI)000582568300008 ()32966075 (PubMedID)2-s2.0-85093538231 (Scopus ID)
Available from: 2020-12-28 Created: 2020-12-28 Last updated: 2022-11-08Bibliographically approved
Stockett, M. H., Bull, J. N., Buntine, J. T., Carrascosa, E., Ji, M., Kono, N., . . . Zettergren, H. (2020). Unimolecular fragmentation and radiative cooling of isolated PAH ions: A quantitative study. Journal of Chemical Physics, 153(15), Article ID 154303.
Open this publication in new window or tab >>Unimolecular fragmentation and radiative cooling of isolated PAH ions: A quantitative study
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2020 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 153, no 15, article id 154303Article in journal (Refereed) Published
Abstract [en]

Time-resolved spontaneous and laser-induced unimolecular fragmentation of perylene cations (C20H12+) has been measured on timescales up to 2 s in a cryogenic electrostatic ion beam storage ring. We elaborate a quantitative model, which includes fragmentation in competition with radiative cooling via both vibrational and electronic (recurrent fluorescence) de-excitation. Excellent agreement with experimental results is found when sequential fragmentation of daughter ions co-stored with the parent perylene ions is included in the model. Based on the comparison of the model to experiment, we constrain the oscillator strength of the D-1 -> D-0 emissive electronic transition in perylene (f(RF) = 0.055 +/- 0.011), as well as the absolute absorption cross section of the D-5 <- D-0 excitation transition (sigma (abs) > 670 Mb). The former transition is responsible for the laser-induced and recurrent fluorescence of perylene, and the latter is the most prominent in the absorption spectrum. The vibrational cooling rate is found to be consistent with the simple harmonic cascade approximation. Quantitative experimental benchmarks of unimolecular processes in polycyclic aromatic hydrocarbon ions like perylene are important for refining astrochemical models.

National Category
Chemical Sciences Physical Sciences
Identifiers
urn:nbn:se:su:diva-188231 (URN)10.1063/5.0027773 (DOI)000586701000001 ()33092387 (PubMedID)2-s2.0-85094607860 (Scopus ID)
Available from: 2020-12-28 Created: 2020-12-28 Last updated: 2023-09-25Bibliographically approved
Bull, J. N., Scholz, M. S., Carrascosa, E., Kristiansson, M. K., Eklund, G., Punnakayathil, N., . . . Stockett, M. H. (2019). Ultraslow radiative cooling of Cn- (n=3-5). Journal of Chemical Physics, 151(11), Article ID 114304.
Open this publication in new window or tab >>Ultraslow radiative cooling of Cn- (n=3-5)
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2019 (English)In: Journal of Chemical Physics, ISSN 0021-9606, E-ISSN 1089-7690, Vol. 151, no 11, article id 114304Article in journal (Refereed) Published
Abstract [en]

Ultraslow radiative cooling lifetimes and adiabatic detachment energies for three astrochemically relevant anions, Cn- (n = 3-5), are measured using the Double ElectroStatic Ion Ring ExpEriment (DESIREE) infrastructure at Stockholm University. DESIREE maintains a background pressure of approximate to 10(-14) mbar and temperature of approximate to 13 K, allowing storage of mass-selected ions for hours and providing conditions coined a molecular cloud in a box. Here, we construct two-dimensional (2D) photodetachment spectra for the target anions by recording photodetachment signal as a function of irradiation wavelength and ion storage time (seconds to minute time scale). Ion cooling lifetimes, which are associated with infrared radiative emission, are extracted from the 2D photodetachment spectrum for each ion by tracking the disappearance of vibrational hot-band signal with ion storage time, giving 1e cooling lifetimes of 3.1 +/- 0.1 s (C3-), 6.8 +/- 0.5 s (C4-), and 24 +/- 5 s (C5-). Fits of the photodetachment spectra for cold ions, i.e., those stored for at least 30 s, provide adiabatic detachment energies in good agreement with values from laser photoelectron spectroscopy on jet-cooled anions, confirming that radiative cooling has occurred in DESIREE. Ion cooling lifetimes are simulated using a simple harmonic cascade model, finding good agreement with experiment and providing a mode-by-mode understanding of the radiative cooling properties. The 2D photodetachment strategy and radiative cooling modeling developed in this study could be applied to investigate the ultraslow cooling dynamics of a wide range of molecular anions.

National Category
Physical Sciences
Identifiers
urn:nbn:se:su:diva-175062 (URN)10.1063/1.5114678 (DOI)000487317400031 ()31542045 (PubMedID)2-s2.0-85072304820 (Scopus ID)
Available from: 2019-10-24 Created: 2019-10-24 Last updated: 2022-11-04Bibliographically approved
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-0953-1716

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