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Coherent X-ray Scattering Reveals Nanoscale Fluctuations in Hydrated Proteins
Stockholm University, Faculty of Science, Department of Physics.ORCID iD: 0000-0003-4906-9335
Stockholm University, Faculty of Science, Department of Physics.ORCID iD: 0000-0003-0160-9478
Stockholm University, Faculty of Science, Department of Physics.ORCID iD: 0000-0002-1366-7360
Stockholm University, Faculty of Science, Department of Physics.ORCID iD: 0000-0001-5754-9334
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Number of Authors: 182023 (English)In: Journal of Physical Chemistry B, ISSN 1520-6106, E-ISSN 1520-5207, Vol. 127, no 21, p. 4922-4930Article in journal (Refereed) Published
Abstract [en]

Hydrated proteins undergo a transition in the deeplysupercooledregime, which is attributed to rapid changes in hydration water andprotein structural dynamics. Here, we investigate the nanoscale stress-relaxationin hydrated lysozyme proteins stimulated and probed by X-ray PhotonCorrelation Spectroscopy (XPCS). This approach allows us to accessthe nanoscale dynamics in the deeply supercooled regime (T = 180 K), which is typically not accessible through equilibriummethods. The observed stimulated dynamic response is attributed tocollective stress-relaxation as the system transitions froma jammed granular state to an elastically driven regime. The relaxationtime constants exhibit Arrhenius temperature dependence upon coolingwith a minimum in the Kohlrausch-Williams-Watts exponentat T = 227 K. The observed minimum is attributedto an increase in dynamical heterogeneity, which coincides with enhancedfluctuations observed in the two-time correlation functions and amaximum in the dynamic susceptibility quantified by the normalizedvariance chi( T ). The amplification offluctuations is consistent with previous studies of hydrated proteins,which indicate the key role of density and enthalpy fluctuations inhydration water. Our study provides new insights into X-ray stimulatedstress-relaxation and the underlying mechanisms behind spatiotemporalfluctuations in biological granular materials.

Place, publisher, year, edition, pages
2023. Vol. 127, no 21, p. 4922-4930
National Category
Astronomy, Astrophysics and Cosmology
Identifiers
URN: urn:nbn:se:su:diva-229924DOI: 10.1021/acs.jpcb.3c02492ISI: 001014320500001PubMedID: 37209106Scopus ID: 2-s2.0-85160964770OAI: oai:DiVA.org:su-229924DiVA, id: diva2:1862722
Available from: 2024-05-30 Created: 2024-05-30 Last updated: 2024-11-25Bibliographically approved
In thesis
1. Exploring Proteins at Cryogenic Temperatures Using X-ray Scattering
Open this publication in new window or tab >>Exploring Proteins at Cryogenic Temperatures Using X-ray Scattering
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Understanding the molecular dynamics and diffusivity of proteins at cryogenic temperatures is essential for optimizing cryopreservation techniques of biological materials, with applications ranging from biotechnology to food science. This knowledge is also relevant for organism living under extreme conditions, such as the sub-zero temperatures of the Arctic Sea. A key feature observed at cryogenic temperatures is the protein dynamic transition near T = 230 K, where proteins lose their flexibility and functionality. The nature of this transition is still elusive, also due to the experimental challenge posed from the crystallization of water at these low temperatures. We investigate the structural dynamics of proteins under supercooled conditions with two approaches: hydrated proteins, where the absence of bulk water prevents freezing, and cryoprotected protein solutions, where cryoprotectants lower the water melting point.

We employ existing X-ray scattering techniques, namely small- and wide- angle X-ray scattering. Additionally, we advance the development of X-ray Photon Correlation Spectroscopy for studying biological systems. In hydrated lysozyme, we observe water temperature-dependent structural changes with a crossover at T = 230 K. Notably, nanoscale dynamics of hydrated proteins reveal enhanced density fluctuations at the same temperature, consistent with the crossing of the hypothesized Widom line in bulk water. This finding suggest a clear link between the protein dynamic transition and the water properties. We extend these studies to cryoprotected ferritin solutions. We explore the collective dynamics of proteins at molecular length scales and observed anomalous diffusion, which was enhanced with increasing protein concentration. Furthermore, we detect a deviation from the Stokes-Einstein relation and a shift in the arrest temperature of the solvent to lower temperature, likely caused by the presence of proteins, which significantly alter the local solvent environment. These results suggests that protein mobility near glassy conditions and at supercooled temperatures may differ drastically from predictions based on solvent viscosity.  

Place, publisher, year, edition, pages
Stockholm: Department of Physics, Stockholm University, 2024. p. 67
Keywords
Protein dynamics, Aqueous solutions, X-ray scattering, X-ray photon correlation spectroscopy, Cryoprotectants
National Category
Physical Sciences Condensed Matter Physics Chemical Sciences Biophysics
Research subject
Chemical Physics
Identifiers
urn:nbn:se:su:diva-235837 (URN)978-91-8107-034-7 (ISBN)978-91-8107-035-4 (ISBN)
Public defence
2025-01-20, FD5, AlbaNova universitetscentrum, Roslagstullsbacken 21 and online via Zoom, public link is available at the department website, Stockholm, 09:00 (English)
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Available from: 2024-12-18 Created: 2024-11-25 Last updated: 2025-02-20Bibliographically approved

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Bin, MaddalenaReiser, MarioFilianina, MariiaBerkowicz, SharonDas, SudiptaÖström, JonatanKarina, AigerimAmann-Winkel, KatrinLadd-Parada, MarjoriePerakis, Fivos

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Bin, MaddalenaReiser, MarioFilianina, MariiaBerkowicz, SharonDas, SudiptaTimmermann, SonjaÖström, JonatanKarina, AigerimAmann-Winkel, KatrinLadd-Parada, MarjorieLehmkuhler, FelixPerakis, Fivos
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