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Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
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Number of Authors: 102018 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 115, no 12, p. 3048-3053Article in journal (Refereed) Published
Abstract [en]

The Saccharomyces cerevisiae respiratory supercomplex factor 1 (Rcf1) protein is located in the mitochondrial inner membrane where it is involved in formation of supercomplexes composed of respiratory complexes III and IV. We report the solution structure of Rcf1, which forms a dimer in dodecylphosphocholine (DPC) micelles, where each monomer consists of a bundle of five transmembrane (TM) helices and a short flexible soluble helix (SH). Three TM helices are unusually charged and provide the dimerization interface consisting of 10 putative salt bridges, defining a charge zipper motif. The dimer structure is supported by molecular dynamics (MD) simulations in DPC, although the simulations show a more dynamic dimer interface than the NMR data. Furthermore, CD and NMR data indicate that Rcf1 undergoes a structural change when reconstituted in liposomes, which is supported by MD data, suggesting that the dimer structure is unstable in a planar membrane environment. Collectively, these data indicate a dynamic monomer-dimer equilibrium. Furthermore, the Rcf1 dimer interacts with cytochrome c, suggesting a role as an electron-transfer bridge between complexes III and IV. The Rcf1 structure will help in understanding its functional roles at a molecular level.

Place, publisher, year, edition, pages
2018. Vol. 115, no 12, p. 3048-3053
Keywords [en]
charge zipper, membrane proteins, mitochondria, bicelles, lipids
National Category
Biological Sciences
Research subject
Biophysics
Identifiers
URN: urn:nbn:se:su:diva-154705DOI: 10.1073/pnas.1712061115ISI: 000427829500069PubMedID: 29507228OAI: oai:DiVA.org:su-154705DiVA, id: diva2:1197255
Available from: 2018-04-12 Created: 2018-04-12 Last updated: 2022-02-26Bibliographically approved
In thesis
1. Structure, dynamics and lipid interaction of membrane-associated proteins
Open this publication in new window or tab >>Structure, dynamics and lipid interaction of membrane-associated proteins
2019 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

A research topic within the field of molecular biophysics is the structure-function relationship of proteins. Membrane proteins are a large, diverse group of biological macromolecules that perform many different and essential functions for the cell. Despite the abundance and importance of membrane proteins, high-resolution 3D structures from this class of proteins are underrepresented among all yet determined structures. The limited amount of data for membrane proteins hints about the higher difficulty associated with studies of this group of molecules. The determination of an atomic resolution structure is often a long process in which several obstacles need to be overcome, in particular for membrane proteins.

Solution-state nuclear magnetic resonance (NMR) is a powerful measurement technique that can provide high-resolution data on the structure and dynamics of biological macromolecules, and is suitable for studies of small, dynamic membrane proteins. However, even with solution-state NMR, the membrane proteins need to be investigated in environments that are sometimes severely compromising for the protein’s native structure and function. In order to evaluate the biological significance of results obtained under such artificial conditions, supporting data from experiments in more realistic membrane models, obtained using NMR and other biophysical methods, is of great importance.

The work presented in this thesis concerns studies of four membrane proteins: WaaG, Rcf1, Rcf2 and TatA. These proteins have very different characteristics in terms of their sizes and expected membrane interactions, and were accordingly found to be differently affected by the model membranes in which they were studied. Our results illustrate both the current possibilities and limitations of solution-state NMR for studying membrane proteins, and highlight the benefits of an approach where several membrane mimicking systems and measurements techniques are used in combination to arrive at correct conclusions on the properties of proteins.

Place, publisher, year, edition, pages
Stockholm: Department of Biochemistry and Biophysics, Stockholm University, 2019. p. 85
National Category
Biophysics
Research subject
Biophysics
Identifiers
urn:nbn:se:su:diva-167352 (URN)978-91-7797-692-9 (ISBN)978-91-7797-693-6 (ISBN)
Public defence
2019-05-23, Magnélisalen, Kemiska övningslaboratoriet, Svante Arrhenius väg 16 B, Stockholm, 10:00 (English)
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Note

At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 4: Manuscript. Paper 6: Manuscript.

Available from: 2019-04-26 Created: 2019-04-02 Last updated: 2025-02-20Bibliographically approved

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Zhou, ShuPettersson, PontusSjöholm, JohannesSjöstrand, DanHögbom, MartinBrzezinski, PeterMäler, LenaÄdelroth, Pia

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