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Effects of protein size, thermodynamic stability, and net charge on cotranslational folding on the ribosome
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
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Number of Authors: 52018 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 115, no 40, p. e9280-E9287Article in journal (Refereed) Published
Abstract [en]

During the last five decades, studies of protein folding in dilute buffer solutions have produced a rich picture of this complex process. In the cell, however, proteins can start to fold while still attached to the ribosome (cotranslational folding) and it is not yet clear how the ribosome affects the folding of protein domains of different sizes, thermodynamic stabilities, and net charges. Here, by using arrest peptides as force sensors and on-ribosome pulse proteolysis, we provide a comprehensive picture of how the distance from the peptidyl transferase center in the ribosome at which proteins fold correlates with protein size. Moreover, an analysis of a large collection of mutants of the Escherichia coli ribosomal protein 56 shows that the force exerted on the nascent chain by protein folding varies linearly with the thermodynamic stability of the folded state, and that the ribosome environment disfavors folding of domains of high net-negative charge.

Place, publisher, year, edition, pages
2018. Vol. 115, no 40, p. e9280-E9287
Keywords [en]
arrest peptide, ribosome, protein folding, pulse proteolysis
National Category
Biological Sciences
Identifiers
URN: urn:nbn:se:su:diva-161004DOI: 10.1073/pnas.1812756115ISI: 000446078700003PubMedID: 30224455OAI: oai:DiVA.org:su-161004DiVA, id: diva2:1255979
Available from: 2018-10-15 Created: 2018-10-15 Last updated: 2022-02-26Bibliographically approved

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Farias-Rico, Jose ArcadioMyronidi, Ioannavon Heijne, Gunnar

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