Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic
Show others and affiliations
Number of Authors: 152021 (English)In: Molecular Ecology Resources, ISSN 1755-098X, E-ISSN 1755-0998, no 3, p. 661-676Article in journal (Refereed) Published
Abstract [en]

The Arctic is one of the most extreme terrestrial environments on the planet. Here, we present the first chromosome-scale genome assembly of a plant adapted to the high Arctic, Draba nivalis (Brassicaceae), an attractive model species for studying plant adaptation to the stresses imposed by this harsh environment. We used an iterative scaffolding strategy with data from short-reads, single-molecule long reads, proximity ligation data, and a genetic map to produce a 302 Mb assembly that is highly contiguous with 91.6% assembled into eight chromosomes (the base chromosome number). To identify candidate genes and gene families that may have facilitated adaptation to Arctic environmental stresses, we performed comparative genomic analyses with nine non-Arctic Brassicaceae species. We show that the D. nivalis genome contains expanded suites of genes associated with drought and cold stress (e.g., related to the maintenance of oxidation-reduction homeostasis, meiosis, and signaling pathways). The expansions of gene families associated with these functions appear to be driven in part by the activity of transposable elements. Tests of positive selection identify suites of candidate genes associated with meiosis and photoperiodism, as well as cold, drought, and oxidative stress responses. Our results reveal a multifaceted landscape of stress adaptation in the D. nivalis genome, offering avenues for the continued development of this species as an Arctic model plant.

Place, publisher, year, edition, pages
2021. no 3, p. 661-676
Keywords [en]
adaptation, Arctic, Brassicaceae, chromosome-scale assembly, linkage map
National Category
Biological Sciences
Identifiers
URN: urn:nbn:se:su:diva-188132DOI: 10.1111/1755-0998.13280ISI: 000588640600001PubMedID: 33058468OAI: oai:DiVA.org:su-188132DiVA, id: diva2:1515048
Available from: 2021-01-07 Created: 2021-01-07 Last updated: 2022-02-25Bibliographically approved

Open Access in DiVA

No full text in DiVA

Other links

Publisher's full textPubMed

Authority records

Birkeland, SiriRoy Choudhury, RimjhimFracassetti, MarcoSlotte, Tanja

Search in DiVA

By author/editor
Birkeland, SiriRoy Choudhury, RimjhimFracassetti, MarcoSlotte, Tanja
By organisation
Department of Ecology, Environment and Plant SciencesScience for Life Laboratory (SciLifeLab)
In the same journal
Molecular Ecology Resources
Biological Sciences

Search outside of DiVA

GoogleGoogle Scholar

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 29 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf