The accuracy of fully automated algorithms for surveillance of healthcare-associated urinary tract infections in hospitalized patientsShow others and affiliations
Number of Authors: 92021 (English)In: Journal of Hospital Infection, ISSN 0195-6701, E-ISSN 1532-2939, Vol. 110, p. 139-147Article in journal (Refereed) Published
Abstract [en]
Background: Surveillance for healthcare-associated infections such as healthcareassociated urinary tract infections (HA-UTI) is important for directing resources and evaluating interventions. However, traditional surveillance methods are resourceintensive and subject to bias.
Aim: To develop and validate a fully automated surveillance algorithm for HA-UTI using electronic health record (EHR) data.
Methods: Five algorithms were developed using EHR data from 2979 admissions at Karolinska University Hospital from 2010 to 2011: (1) positive urine culture (UCx); (2) positive UCx + UTI codes (International Statistical Classification of Diseases and Related Health Problems, 10th revision); (3) positive UCx + UTI-specific antibiotics; (4) positive UCx + fever and/or UTI symptoms; (5) algorithm 4 with negation for fever without UTI symptoms. Natural language processing (NLP) was used for processing free-text medical notes. The algorithms were validated in 1258 potential UTI episodes from January to March 2012 and results extrapolated to all UTI episodes within this period (N 1/4 16,712). The reference standard for HA-UTIs was manual record review according to the European Centre for Disease Prevention and Control (and US Centers for Disease Control and Prevention) definitions by trained healthcare personnel.
Findings: Of the 1258 UTI episodes, 163 fulfilled the ECDC HA-UTI definition and the algorithms classified 391, 150, 189, 194, and 153 UTI episodes, respectively, as HA-UTI. Algorithms 1, 2, and 3 had insufficient performances. Algorithm 4 achieved better performance and algorithm 5 performed best for surveillance purposes with sensitivity 0.667 (95% confidence interval: 0.594-0.733), specificity 0.997 (0.996-0.998), positive predictive value 0.719 (0.624-0.807) and negative predictive value 0.997 (0.996-0.997).
Conclusion: A fully automated surveillance algorithm based on NLP to find UTI symptoms in free-text had acceptable performance to detect HA-UTI compared to manual record review. Algorithms based on administrative and microbiology data only were not sufficient.
Place, publisher, year, edition, pages
2021. Vol. 110, p. 139-147
Keywords [en]
Automated surveillance, Algorithms, Healthcare-associated infection, Natural language processing, Urinary tract infections
National Category
Infectious Medicine Microbiology in the medical area
Identifiers
URN: urn:nbn:se:su:diva-193047DOI: 10.1016/j.jhin.2021.01.023ISI: 000632342500020PubMedID: 33548370OAI: oai:DiVA.org:su-193047DiVA, id: diva2:1553760
2021-05-102021-05-102022-03-23Bibliographically approved