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NMR Structure and Dynamics Studies of Yeast Respiratory Supercomplex Factor 2
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Chinese Academy of Sciences, China.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0003-3860-4988
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Number of Authors: 72021 (English)In: Structure, ISSN 0969-2126, E-ISSN 1878-4186, Vol. 29, no 3, p. 275-283Article in journal (Refereed) Published
Abstract [en]

The Saccharomyces cerevisiae respiratory supercomplex factor 2 (Rcf2) is a 224-residue protein located in the mitochondrial inner membrane where it is involved in the formation of supercomplexes composed of cytochrome bc(1) and cytochrome c oxidase. We previously demonstrated that Rcf2 forms a dimer in dodecylphosphocholine micelles, and here we report the solution NMR structure of this Rcf2 dimer. Each Rcf2 monomer has two soluble alpha helices and five putative transmembrane (TM) alpha helices, including an unexpectedly charged TM helix at the C terminus, which mediates dimer formation. The NOE contacts indicate the presence of inter-monomer salt bridges and hydrogen bonds at the dimer interface, which stabilize the Rcf2 dimer structure. Moreover, NMR chemical shift change mapping upon lipid titrations as well as molecular dynamics analysis reveal possible structural changes upon embedding Rcf2 into a native lipid environment. Our results contribute to the understanding of respiratory supercomplex formation and regulation.

Place, publisher, year, edition, pages
2021. Vol. 29, no 3, p. 275-283
Keywords [en]
charge zipper, protein-lipid interactions, molecular dynamics, mitochondria, Hig protein, membrane protein, solution structure
National Category
Biological Sciences
Identifiers
URN: urn:nbn:se:su:diva-193384DOI: 10.1016/j.str.2020.08.008ISI: 000629154700009PubMedID: 32905793OAI: oai:DiVA.org:su-193384DiVA, id: diva2:1557387
Available from: 2021-05-25 Created: 2021-05-25 Last updated: 2022-02-25Bibliographically approved
In thesis
1. Structure, dynamics and lipid interaction of membrane-associated proteins
Open this publication in new window or tab >>Structure, dynamics and lipid interaction of membrane-associated proteins
2019 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

A research topic within the field of molecular biophysics is the structure-function relationship of proteins. Membrane proteins are a large, diverse group of biological macromolecules that perform many different and essential functions for the cell. Despite the abundance and importance of membrane proteins, high-resolution 3D structures from this class of proteins are underrepresented among all yet determined structures. The limited amount of data for membrane proteins hints about the higher difficulty associated with studies of this group of molecules. The determination of an atomic resolution structure is often a long process in which several obstacles need to be overcome, in particular for membrane proteins.

Solution-state nuclear magnetic resonance (NMR) is a powerful measurement technique that can provide high-resolution data on the structure and dynamics of biological macromolecules, and is suitable for studies of small, dynamic membrane proteins. However, even with solution-state NMR, the membrane proteins need to be investigated in environments that are sometimes severely compromising for the protein’s native structure and function. In order to evaluate the biological significance of results obtained under such artificial conditions, supporting data from experiments in more realistic membrane models, obtained using NMR and other biophysical methods, is of great importance.

The work presented in this thesis concerns studies of four membrane proteins: WaaG, Rcf1, Rcf2 and TatA. These proteins have very different characteristics in terms of their sizes and expected membrane interactions, and were accordingly found to be differently affected by the model membranes in which they were studied. Our results illustrate both the current possibilities and limitations of solution-state NMR for studying membrane proteins, and highlight the benefits of an approach where several membrane mimicking systems and measurements techniques are used in combination to arrive at correct conclusions on the properties of proteins.

Place, publisher, year, edition, pages
Stockholm: Department of Biochemistry and Biophysics, Stockholm University, 2019. p. 85
National Category
Biophysics
Research subject
Biophysics
Identifiers
urn:nbn:se:su:diva-167352 (URN)978-91-7797-692-9 (ISBN)978-91-7797-693-6 (ISBN)
Public defence
2019-05-23, Magnélisalen, Kemiska övningslaboratoriet, Svante Arrhenius väg 16 B, Stockholm, 10:00 (English)
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Supervisors
Note

At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 4: Manuscript. Paper 6: Manuscript.

Available from: 2019-04-26 Created: 2019-04-02 Last updated: 2025-02-20Bibliographically approved

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Zhou, ShuPettersson, PontusBrzezinski, PeterMäler, LenaÄdelroth, Pia

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