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Chromosome Level Assembly of the Comma Butterfly (Polygonia c-album)
Stockholm University, Faculty of Science, Department of Zoology.ORCID iD: 0000-0003-0296-0577
Stockholm University, Faculty of Science, Department of Zoology.ORCID iD: 0000-0001-8610-334X
Stockholm University, Faculty of Science, Department of Zoology.ORCID iD: 0000-0003-4195-8920
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Number of Authors: 52021 (English)In: Genome Biology and Evolution, E-ISSN 1759-6653, Vol. 13, no 5, article id evab054Article in journal (Refereed) Published
Abstract [en]

The comma butterfly (Polygonia c-album, Nymphalidae, Lepidoptera) is a model insect species, most notably in the study of phenotypic plasticity and plant-insect coevolutionary interactions. In order to facilitate the integration of genomic tools with a diverse body of ecological and evolutionary research, we assembled the genome of a Swedish comma using 10X sequencing, scaffolding with matepair data, genome polishing, and assignment to linkage groups using a high-density linkage map. The resulting genome is 373 Mb in size, with a scaffold N50 of 11.7 Mb and contig N50 of 11,2Mb. The genome contained 90.1% of single-copy Lepidopteran orthologs in a BUSCO analysis of 5,286 genes. A total of 21,004 gene-models were annotated on the genome using RNA-Seq data from larval and adult tissue in combination with proteins from the Arthropoda database, resulting in a high-quality annotation for which functional annotations were generated. We further documented the quality of the chromosomal assembly via synteny assessment with Melitaea cinxia. The resulting annotated, chromosome-level genome will provide an important resource for investigating coevolutionary dynamics and comparative analyses in Lepidoptera.

Place, publisher, year, edition, pages
2021. Vol. 13, no 5, article id evab054
Keywords [en]
linkage map, butterfly genome, quantitative annotation assessment, comparative genomics, Polygonia c-album
National Category
Biological Sciences
Identifiers
URN: urn:nbn:se:su:diva-196360DOI: 10.1093/gbe/evab054ISI: 000661527400004PubMedID: 33749729OAI: oai:DiVA.org:su-196360DiVA, id: diva2:1591492
Available from: 2021-09-06 Created: 2021-09-06 Last updated: 2024-07-04Bibliographically approved

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Celorio-Mancera, Maria de la PazSteward, Rachel A.Nylin, SörenWheat, Christopher W.

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