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ADAR1- and ADAR2-mediated regulation of miR-376b maturation and targeting modulates GABA catabolism
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.ORCID iD: 0000-0002-0362-923X
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.ORCID iD: 0000-0002-3272-1377
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(English)Manuscript (preprint) (Other academic)
Abstract [en]

MicroRNAs (miRNAs) are short non-coding RNA molecules that regulate gene expression by inhibiting translation or inducing degradation of target mRNAs. miRNAs are often expressed as polycistronic transcripts, so-called miRNA clusters, where several miRNA precursors are present in the same transcript. The largest mammalian miRNA cluster, the miR-379-410 cluster, is expressed primarily during embryonic development and in the adult brain. We investigated adenosine-to-inosine (A-to-I) RNA editing by the adenosine deaminase acting on RNA (ADAR) enzymes of the miR-379-410 cluster as a possible mechanism of modulating expression and activity of the miRNAs in a brain-specific manner. We show that editing levels of the majority of mature miRNAs are lower than the editing level of the corresponding site in primary miRNA (pri-miRNA) precursors. However, for one miRNA, miR-376b-3p, editing was significantly higher in the mature form than in the primary precursor. miR-376b-3p maturation is negatively regulated by ADAR2 in an editing-independent manner, while ADAR1 and ADAR2 editing was observed to be competitive. The edited miR-376b-3p targets a different set of mRNAs than unedited miR-376b-3p, including 4-aminobutyrate aminotransferase (Abat), the enzyme responsible for the catabolism of the neurotransmitter GABA. Expression of edited miR-376b-3p led to increased intracellular GABA levels, as well as increased cell surface presentation of GABAA receptors, previously shown to be dependent on intracellular GABA levels. Our results indicate that editing and editing-independent effects modulates the expression of miR-376b-3p, with the potential to regulate GABAergic signaling in the brain. 

Keywords [en]
RNA, microRNA, RNA editing, brain development, neuron
National Category
Genetics and Genomics
Research subject
Molecular Genetics; Cell Biology; Molecular Biology
Identifiers
URN: urn:nbn:se:su:diva-198096OAI: oai:DiVA.org:su-198096DiVA, id: diva2:1606245
Funder
Swedish Research Council, 2018-03823Swedish Research Council, 2015-04611EU, European Research Council, 758397Available from: 2021-10-26 Created: 2021-10-26 Last updated: 2025-02-07Bibliographically approved
In thesis
1. Diversifying the transcriptome: Adenosine-to-inosine RNA editing in the mammalian brain
Open this publication in new window or tab >>Diversifying the transcriptome: Adenosine-to-inosine RNA editing in the mammalian brain
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Metazoan transcriptomes are extensively modified by adenosine-to-inosine (A-to-I) RNA editing, a process by which adenosines within double-stranded RNA are enzymatically deaminated to form inosines. Inosines has base-pairing characteristics similar to guanosine, meaning that A-to-I RNA editing results in functional rewriting of transcripts, affecting many biological processes. The aim of this thesis was to investigate the regulation and the function of RNA editing in the mammalian brain. We applied a novel method, in situ sequencing (ISS), to detect editing substrates in the developing mouse brain, which revealed regional and cell type-specific editing patterns emerging during development. Additionally, we characterized the structural requirements of site-selective editing and discovered an editing inducer elements (EIEs) as a general feature of efficiently edited substrates. Also edited microRNAs (miRNAs) were found to have EIEs, in the form of neighboring primary miRNA (pri-miRNA) hairpin structures. Site-selective editing has previously been found to increase during brain development. To investigate this developmental increase, we analyzed the regulation of ADAR2, one of the two editing enzymes, in an in vitro model system for neuronal maturation. Here, we observed increased nuclear import of ADAR2 during neuronal maturation, correlating to increased editing levels. Increased expression of the proteins importin-ɑ4 and Pin1 were found to contribute to this increased nuclear import. Finally, we studied editing of members of the miR-379-410 cluster, and we found that in general pri-miRNAs are more frequently edited than the corresponding mature miRNAs, which possibly indicates an inhibitory role of ADAR enzymes on miRNA biogenesis.. However, the opposite trend was observed for miR-376b-3p, which displayed higher editing in its mature form. Studying the editing and biogenesis of miR-376b-3p, we found that ADAR1 edits the miRNA while ADAR2 inhibits its maturation. Furthermore, the two enzymes compete in binding the pri-miRNA. Subsequently, we identified neuronal target genes of the edited miR-376b-3p. These included the 4-aminobutyrate aminotransferase (Abat), the enzyme responsible for the catabolism of the neurotransmitter GABA, and our results indicate that editing of miR-376b-3p can regulate GABAergic signaling.

Place, publisher, year, edition, pages
Stockholm: Department of Molecular Biosciences, the Wenner-Gren Institute, Stockholm University, 2021. p. 73
Keywords
RNA editing, ADAR, microRNA, brain development, neuron
National Category
Biochemistry Molecular Biology
Research subject
Molecular Bioscience
Identifiers
urn:nbn:se:su:diva-198116 (URN)978-91-7911-680-4 (ISBN)978-91-7911-681-1 (ISBN)
Public defence
2021-12-17, Vivi Täckholmsalen (Q-salen), NPQ-huset, Svante Arrhenius väg 20, also online via Zoom, public link is available at the department website, Stockholm, 10:00 (English)
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Supervisors
Available from: 2021-11-24 Created: 2021-10-27 Last updated: 2025-02-20Bibliographically approved

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Widmark, AlbinSagredo, EduardoKarlström, VictorBehm, MikaelaBiryukova, InnaFriedländer, Marc R.Daniel, ChammiranÖhman, Marie

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Widmark, AlbinSagredo, EduardoKarlström, VictorBehm, MikaelaBiryukova, InnaFriedländer, Marc R.Daniel, ChammiranÖhman, Marie
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Department of Molecular Biosciences, The Wenner-Gren InstituteScience for Life Laboratory (SciLifeLab)
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