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Identification of essential genes associated with SARS-CoV-2 infection as potential drug target candidates with machine learning algorithms
Stockholm University, Faculty of Social Sciences, Department of Computer and Systems Sciences. Stockholm University, Science for Life Laboratory (SciLifeLab).
Department of Mathematics, Qazvin Branch, Islamic Azad University, Iran.
Number of Authors: 22023 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 13, no 1, article id 15141Article in journal (Refereed) Published
Abstract [en]

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) requires the fast discovery of effective treatments to fight this worldwide concern. Several genes associated with the SARS-CoV-2, which are essential for its functionality, pathogenesis, and survival, have been identified. These genes, which play crucial roles in SARS-CoV-2 infection, are considered potential therapeutic targets. Developing drugs against these essential genes to inhibit their regular functions could be a good approach for COVID-19 treatment. Artificial intelligence and machine learning methods provide powerful infrastructures for interpreting and understanding the available data and can assist in finding fast explanations and cures. We propose a method to highlight the essential genes that play crucial roles in SARS-CoV-2 pathogenesis. For this purpose, we define eleven informative topological and biological features for the biological and PPI networks constructed on gene sets that correspond to COVID-19. Then, we use three different unsupervised learning algorithms with different approaches to rank the important genes with respect to our defined informative features. Finally, we present a set of 18 important genes related to COVID-19. Materials and implementations are available at: https://github.com/MahnazHabibi/Gene_analysis.

Place, publisher, year, edition, pages
2023. Vol. 13, no 1, article id 15141
National Category
Bioinformatics and Computational Biology Infectious Medicine
Identifiers
URN: urn:nbn:se:su:diva-223226DOI: 10.1038/s41598-023-42127-9ISI: 001067753600005PubMedID: 37704748Scopus ID: 2-s2.0-85171162453OAI: oai:DiVA.org:su-223226DiVA, id: diva2:1809821
Available from: 2023-11-06 Created: 2023-11-06 Last updated: 2025-02-05Bibliographically approved

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Taheri, Golnaz

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