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jSquid: a Java applet for graphical on-line network exploration.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Stockholms Bioinformatikcentrum.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Stockholms Bioinformatikcentrum.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Stockholms Bioinformatikcentrum.
2008 (English)In: Bioinformatics, ISSN 1460-2059, Vol. 24, no 12, 1467-8 p.Article in journal (Refereed) Published
Abstract [en]

SUMMARY: jSquid is a graph visualization tool for exploring graphs from protein-protein interaction or functional coupling networks. The tool was designed for the FunCoup web site, but can be used for any similar network exploring purpose. The program offers various visualization and graph manipulation techniques to increase the utility for the user. AVAILABILITY: jSquid is available for direct usage and download at http://jSquid.sbc.su.se including source code under the GPLv3 license, and input examples. It requires Java version 5 or higher to run properly. CONTACT: erik.sonnhammer@sbc.su.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Place, publisher, year, edition, pages
2008. Vol. 24, no 12, 1467-8 p.
Keyword [en]
Algorithms, Computer Graphics, Computer Simulation, Information Storage and Retrieval/*methods, Models; Biological, Programming Languages, Signal Transduction/*physiology, Software, User-Computer Interface
Identifiers
URN: urn:nbn:se:su:diva-17880ISI: 000256756800011PubMedID: 18445606OAI: oai:DiVA.org:su-17880DiVA: diva2:184401
Available from: 2009-01-21 Created: 2009-01-21 Last updated: 2011-01-10Bibliographically approved

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