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PfamAlyzer: domain-centric homology search
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
2007 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1460-2059, Vol. 23, no 24, 3382-3383 p.Article in journal (Refereed) Published
Abstract [en]

PfamAlyzer is a Java applet that enables exploration of Pfam domain architectures using a user-friendly graphical interface. It can search the UniProt protein database for a domain pattern. Domain patterns similar to the query are presented graphically by PfamAlyzer either in a ranked list or pinned to the tree of life. Such domain-centric homology search can assist identification of distant homologs with shared domain architecture.

Place, publisher, year, edition, pages
2007. Vol. 23, no 24, 3382-3383 p.
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Natural Sciences
URN: urn:nbn:se:su:diva-55239DOI: 10.1093/bioinformatics/btm521ISI: 000251505700016OAI: diva2:402303
authorCount :2Available from: 2011-03-07 Created: 2011-03-07 Last updated: 2011-03-07Bibliographically approved

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Sonnhammer, Erik L. L.
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