Change search
ReferencesLink to record
Permanent link

Direct link
Quantitative subproteomic analysis of age-related changes in mouse liver peroxisomes by iTRAQ LC-MS/MS
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
(English)In: Journal of chromatography. B, ISSN 1570-0232, E-ISSN 1873-376XArticle in journal (Refereed) Submitted
National Category
Analytical Chemistry
URN: urn:nbn:se:su:diva-56481OAI: diva2:411547
Available from: 2011-04-18 Created: 2011-04-18 Last updated: 2011-04-20Bibliographically approved
In thesis
1. Proteomics in biomarker research: Insights into the effects of aging and environment on biological systems
Open this publication in new window or tab >>Proteomics in biomarker research: Insights into the effects of aging and environment on biological systems
2011 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Proteomics is the global analysis of proteins that covers a broad range of technologies aimed at determining the identity and quantity of proteins expressed in the cell, their three-dimensional structure and interaction partners. In contrast to genome, proteome reflects more accurately on the dynamic state of the cell, tissue, or an organism. Therefore much is expected from proteomics to yield better disease markers for early diagnosis and therapy monitoring, as well as biomarkers that would indicate environmental exposure or provide prediction of biological age.

In this thesis, I have developed and applied robust and sensitive subproteomic approaches to study the effect of aging as well as and environmental pollution using different animal models.

In the first part, a high-throughput proteomic method based on liquid chromatography coupled to 2-dimensional gel electrophoresis (LC/2-DE) was developed. The usefulness of this method has been demonstrated by applying it to the assessment of marine pollution in a field experiment.

Next, I have utilized this subproteomic approach to study the effect of aging in mouse kidney of both genders. As a result, a protein expression signature of aging kidney was obtained, revealing gender-dependent alterations in proteome profiles of aging mouse kidney.

In order to further reduce the dynamic range of protein expression and increase the sensitivity of proteomic analysis, I have applied a shotgun mass spectrometry-based proteomic approach using isobaric tags for relative and absolute quantification (iTRAQ) coupled to liquid chromatography and tandem mass spectrometry (LC-MS/MS) to study age-related differences in peroxisome-enriched fractions from mouse liver. Only eight proteins showed statistically significant difference in expression (p<0.05) with moderate folds. This study indicates that age-depended changes in the liver proteome are minimal, suggesting that its proteome is efficiently maintained until certain age.

Finally, in the context of aging studies and the role of peroxisomes in aging, I have tested the utility of cell-penetrating peptides (CPPs) as agents for protein delivery into acatalasemic peroxisomes using yeast as a model. The results obtained suggest that CPPs may be suitable for the delivery of antioxidants to peroxisomes and in future could provide a tool for the protein therapy of age-related diseases.

Place, publisher, year, edition, pages
Stockholm: Department of Biochemistry and Biophysics, Stockholm University, 2011. 63 p.
proteomics, biomarker, peroxisomes, 2-dimensional gel electrophoresis (2-DE), mass spectrometry (MS), aging, marine pollution
National Category
Biochemistry and Molecular Biology Environmental Sciences Biochemistry and Molecular Biology
Research subject
urn:nbn:se:su:diva-56483 (URN)978-91-7447-209-7 (ISBN)
Public defence
2011-05-27, Magnélisalen, Kemiska övningslaboratoriet, Svante Arrhenius väg 16 B, Stockholm, 14:00 (English)
At the time of the doctoral defense, the following publications were unpublished and had a status as follows: Paper 3: Submitted, Paper 4: Submitted.Available from: 2011-05-05 Created: 2011-04-18 Last updated: 2011-05-10Bibliographically approved

Open Access in DiVA

No full text

Search in DiVA

By author/editor
Amelina, HannaCristobal, Susana
By organisation
Department of Biochemistry and Biophysics
In the same journal
Journal of chromatography. B
Analytical Chemistry

Search outside of DiVA

GoogleGoogle Scholar
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

Total: 72 hits
ReferencesLink to record
Permanent link

Direct link