Glacial meltwater is a major contributor to stratification in polar waters, particularly in glacial fjords where it is contained by fjord topography. Stratification from glacial meltwater input impacts both light and nutrient availability, altering the timing and magnitude of phytoplankton blooms and peak in secondary productivity. Ice conditions can further impede near-surface circulation and trap low-density meltwater plumes, amplifying stratification. Whilst stratification is a critical process in the initiation of phytoplankton blooms, reduced mixing can impede nutrient resupply in the euphotic zone, reduce productivity, and alter the formation processes of marine snow. Here, using a combination of optical and acoustic instrumentation, we investigated how different stratification conditions in two adjacent fjords of northwest Greenland (Petermann Fjord, PF, and Sherard Osborn Fjord, SOF) impact the vertical distribution of two key components of Arctic pelagic ecosystems: marine snow and copepods. We show that the amplified stratification caused by ice damming outside SOF was associated with lower indices of primary and secondary production. Stratification also reduced concentrations of marine snow and resulted in an altered vertical distribution of small sphere particles that were likely fecal pellets in the top 100 m of SOF. Zooplankton distributions in both fjords were centered below the fluorescence peak but were more tightly coupled with the chlorophyll maximum in SOF than in the well-mixed PF. Feeding conditions in SOF were poorer, while in the more productive PF zooplankton were distributed deeper where risks of predation are likely reduced. Although small and large copepod densities were comparable between fjords, the low numbers of nauplii in SOF further suggest mismatch conditions not suitable for their survival. We demonstrate that sea ice conditions are linked to local physical water column stratification that has cascading effects on productivity and the abundance, distribution, and types of marine snow and copepods. Future conditions in glacial fjords are not clear because thermal stratification and glacier runoff will increase, but the number of ice damming events could decrease.

Background  Cable bacteria are filamentous sulphide-oxidisers capable of cm-scale electron transport. They are generally considered restricted to the upper few oxic–suboxic cm of marine sediments, where they couple sulphide oxidation to oxygen or nitrate reduction. Despite their influence on redox gradients, trace metal mobility, and nutrient cycling, their presence and activity in deeper anoxic sediment layers remain unknown. The presence and activity of marine cable bacteria (Candidatus Electrothrix) were investigated at four stations in Sweden and Finland, including deep vertical profiles of anoxic sediment layers, to assess their presence and activity under different environmental contexts.

Results  Using metatranscriptomic data for rRNA-based community profiling and gene expression combined with porewater geochemistry, evidence of abundant and active cable bacteria was found, peaking below 20 cm depth in deep anoxic sediment layers of Koljö Fjord on the Swedish West Coast. This zone coincided with elevated gene expressions related to sulphide oxidation (including sqr) and nitrate reduction (napA), as well as an abundant presence of sulphide and a sharp nitrate peak. Phylogenetic analyses revealed a diverse assemblage of Ca. Electrothrix includes several potential novel taxa. The co-occurrence of cable bacteria activity, sulphide availability, and a nitrate peak at depth suggests that these organisms may be supported by local nitrate production under anoxic conditions.

Conclusions  Our findings challenge the prevailing view that cable bacteria are restricted to shallow sediment horizons and demonstrate their activity and diversity in deep, anoxic layers. This expands the known ecological niche of cable bacteria and suggests that locally produced nitrate under anoxic conditions may facilitate their activity at depth. This discovery advances our understanding of ecology in anoxic marine environments, providing new insights into marine cable bacteria, sediment biogeochemistry, and analogues of early Earth microbial ecosystems.

Planktonic foraminifera are calcifying protists that represent a minor but important part of the pelagic microzooplankton. They are found in all of Earth's ocean basins and are widely studied in sediment records to reconstruct climatic and environmental changes throughout geological time. The Arctic Ocean is currently being transformed in response to modern climate change; however, the effect on planktonic foraminiferal populations is virtually unknown. Here, we provide the first systematic sampling of planktonic foraminifera communities in the "high"Arctic Ocean - defined in this work as areas north of 80° N - specifically in the broad region located between northern Greenland (the Lincoln Sea with its adjoining fjords and the Morris Jesup Rise), the Yermak Plateau, and the North Pole. Stratified depth tows down to 1000 m using a multinet were performed to reveal the species composition and spatial variability in these communities below the summer sea ice. The average abundance in the top 200 m ranged between 15 and 65 individuals m-3 in the central Arctic Ocean and was 0.3 individuals m-3 in the shelf area of the Lincoln Sea. At all stations, except one site at the Yermak Plateau, assemblages consisted solely of the polar specialist Neogloboquadrina pachyderma. It predominated in the top 100 m, where it was likely feeding on phytoplankton below the ice. Near the Yermak Plateau, at the outer edge of the pack ice, rare specimens of Turborotalita quinqueloba occurred that appeared to be associated with the inflowing Atlantic Water layer. Our results would suggest that the anticipated turnover from polar to subpolar planktonic species in the perennially ice-covered part of the central Arctic Ocean has not yet occurred, in agreement with a recent meta-analysis from the Fram Strait which suggested that the increased export of sea ice is blocking the influx of Atlantic-sourced species. The presented data set will be a valuable reference for continued monitoring of the abundance and composition of planktonic foraminifera communities as they respond to the ongoing sea-ice decline and the "Atlantification"of the Arctic Ocean basin. Additionally, the results can be used to assist paleoceanographic interpretations, based on sedimented foraminifera assemblages.

We investigated the relative contributions of various factors that influence seasonal changes in sea surface partial pressure of CO₂ (pCO₂, calculated from the measured pH and total alkalinity) in four regions of northwestern Greenland: Nares Strait, Lincoln Sea, Sherard Osborn and Petermann fjords. Using the temperature minimum layer as a proxy for winter conditions, we examined pCO₂ dynamics from the onset of sea-ice melt to summer. Our findings revealed significant spatial variability in pCO₂, driven by differences in temperature, freshwater inputs, and biological activity. In particular, in Sherard Osborn Fjord substantial freshwater inputs and strong stratification were found to enhance pCO₂ accumulation, while in Petermann Fjord biological CO₂ uptake was the main driver. This study, conducted in summer 2019, underscores the critical role of northwest Greenland’s coastal waters as a summer CO₂ sink. It highlights the complex interplay of physical and biogeochemical processes in modulating pCO₂, suggesting significant regional differences in CO₂ dynamics between two neighboring fjords.

Coastal areas are an important source of methane (CH4). However, the exact origins of CH4 in the surface waters of coastal regions, which in turn drive sea-air emissions, remain uncertain. To gain a comprehensive understanding of the current and future climate change feedbacks, it is crucial to identify these CH4 sources and processes that regulate its formation and oxidation. This study investigated coastal CH4 dynamics by comparing water column data from six stations located in the brackish Tvärminne Archipelago, Baltic Sea. The sediment biogeochemistry and microbiology were further investigated at two stations (i.e., nearshore and offshore). These stations differed in terms of stratification, bottom water redox conditions, and organic matter loading. At the nearshore station, CH4 diffusion from the sediment into the water column was negligible, because nearly all CH4 was oxidized within the upper sediment column before reaching the sediment surface. On the other hand, at the offshore station, there was significant benthic diffusion of CH4, albeit the majority underwent oxidation before reaching the sediment-water interface, due to shoaling of the sulfate methane transition zone (SMTZ). The potential contribution of CH4 production in the water column was evaluated and was found to be negligible. After examining the isotopic signatures of δ13C-CH4 across the sediment and water column, it became apparent that the surface water δ13C-CH4 values observed in areas with thermal stratification could not be explained by diffusion, advective fluxes, nor production in the water column. In fact, these values bore a remarkable resemblance to those detected below the SMTZ. This supports the hypothesis that the source of CH4 in surface waters is more likely to originate from ebullition than diffusion in stratified brackish coastal systems.

Coastal environments are a major source of marine methane in the atmosphere. Eutrophication and deoxygenation have the potential to amplify the coastal methane emissions. Here, we investigate methane dynamics in the eutrophic Stockholm Archipelago. We cover a range of sites with contrasting water column redox conditions and rates of organic matter degradation, with the latter reflected by the depth of the sulfate–methane transition zone (SMTZ) in the sediment. We find the highest benthic release of methane (2.2–8.6 mmol m^–2 d^–1) at sites where the SMTZ is located close to the sediment–water interface (2–10 cm). A large proportion of methane is removed in the water column via aerobic or anaerobic microbial pathways. At many locations, water column methane is highly depleted in ¹³C, pointing toward substantial bubble dissolution. Calculated and measured rates of methane release to the atmosphere range from 0.03 to 0.4 mmol m^–2 d^–1 and from 0.1 to 1.7 mmol m^–2 d^–1, respectively, with the highest fluxes at locations with a shallow SMTZ and anoxic and sulfidic bottom waters. Taken together, our results show that sites suffering most from both eutrophication and deoxygenation are hotspots of coastal marine methane emissions.

The expansion of transient and permanent coastal benthic anoxia is one of the most severe problems for the coastal ocean globally. We report frequent, hidden hypoxia in the bottom 5 cm of the water column of a coastal site in the central Baltic Sea by continuous high-resolution profiling of oxygen (O₂) directly above the sediment surface. This hypoxia stood in stark contrast to 30-yr O₂ monitoring records at this site that suggest apparent continuous well-oxygenated conditions. In situ measurements showed highly dynamic conditions in the bottom 30 cm recording frequent gradual and abrupt changes between normoxic (> 63 μmol L⁻¹) and hypoxic (< 63 μmol L⁻¹) conditions that would remain undetectable by conventional bottom water O₂ monitoring. The temporal variability of these “hidden” hypoxia is tied to the dynamic current field and to changes in O₂ consumption following resuspension events. Our observations suggest that transient benthic hypoxia is much more common than routine monitoring data indicate.

Submarine groundwater discharge (SGD) is an important process responsible for transporting terrestrial dissolved chemical substances into the coastal ocean, thereby impacting the marine ecosystem. Despites its significance, there are few studies addressing SGD in the northern Baltic Sea. Here we investigate the potential occurrence of SGD in an area characterized by seafloor terraces formed in varved glacial clay located around Fifång Island, Southern Stockholm Archipelago. We analyzed 222Rn activity and porewater geochemistry in both marine and terrestrial sediment cores retrieved from Fifång Island and its surrounding offshore areas. Results from 222Rn mass-balance calculations, water isotopes, salinity, chloride concentration, and dating (including 14C and helium-tritium dating) indicate that modern groundwater flows through varved glacial clay layers and fractured rocks on Fifång Island and discharges into Fifång Bay. Additionally, the offshore cores reveal a saline groundwater source that, dating of the dissolved inorganic carbon, appears systematically younger than the hosting clay varves dated using the Swedish clay varve chronology. Acoustic blanking in our acquired sub-bottom profiles may be related to this fluid migration. The occurrence of this saline groundwater seems to be independent from the distance to the submarine terraces. Collectively, our study confirms the occurrence of submarine groundwater in the varved glacial clay close to Fifång Island and further offshore. Our findings help establish the significance of submarine groundwater discharge in influencing the past and present coastal environment in the Baltic Sea region.

Methane (CH4) cycling in the Baltic Sea is studied through model simulations that incorporate the stable isotopes of CH4 (12C-CH4 and 13C-CH4) in a physical-biogeochemical model. A major uncertainty is that spatial and temporal variations in the sediment source are not well known. Furthermore, the coarse spatial resolution prevents the model from resolving shallow-water near-shore areas for which measurements indicate occurrences of considerably higher CH4 concentrations and emissions compared with the open Baltic Sea. A preliminary CH4 budget for the central Baltic Sea (the Baltic Proper) identifies benthic release as the dominant CH4 source, which is largely balanced by oxidation in the water column and to a smaller degree by outgassing. The contributions from river loads and lateral exchange with adjacent areas are of marginal importance. Simulated total CH4 emissions from the Baltic Proper correspond to an average ∼1/41.5 mmol CH4 m-2 yr-1, which can be compared to a fitted sediment source of ∼1/418 mmol CH4 m-2 yr-1. A large-scale approach is used in this study, but the parameterizations and parameters presented here could also be implemented in models of near-shore areas where CH4 concentrations and fluxes are typically substantially larger and more variable. Currently, it is not known how important local shallow-water CH4 hotspots are compared with the open water outgassing in the Baltic Sea.

The vast oxygen-depleted area of the central Baltic Sea is the largest human-induced dead zone in the world with 70,000 km(2) or approximately three times the second largest one in the Gulf of Mexico. Methane occurs in high concentrations in bottom waters (3200 nM) and sediments (30 mM), and its dynamics is better constrained for the water column, but still poorly understood on sediments. Here we show that sediment accumulation rate plays a major role in regulating the quantity of organic matter and its residence time in the sulphate reduction and methanogenesis zones and, therefore, affects methane generation, consumption, and diffusive flux in sediments near the seafloor (< 1 m). High fluxes found in high sediment accumulation rate areas and competition for substrate (organoclastic sulphate reduction vs. anaerobic oxidation of methane with sulphate), compromise the ability of the thin microbial filter to consume and prevent methane diffusion through the seafloor.