Change search
Link to record
Permanent link

Direct link
Publications (3 of 3) Show all publications
Mühleip, A., Kock Flygaard, R., Baradaran, R., Haapanen, O., Gruhl, T., Tobiasson, V., . . . Amunts, A. (2023). Structural basis of mitochondrial membrane bending by the I–II–III2–IV2 supercomplex. Nature, 615(7954), 934-938
Open this publication in new window or tab >>Structural basis of mitochondrial membrane bending by the I–II–III2–IV2 supercomplex
Show others...
2023 (English)In: Nature, ISSN 0028-0836, E-ISSN 1476-4687, Vol. 615, no 7954, p. 934-938Article in journal (Refereed) Published
Abstract [en]

Mitochondrial energy conversion requires an intricate architecture of the inner mitochondrial membrane. Here we show that a supercomplex containing all four respiratory chain components contributes to membrane curvature induction in ciliates. We report cryo-electron microscopy and cryo-tomography structures of the supercomplex that comprises 150 different proteins and 311 bound lipids, forming a stable 5.8-MDa assembly. Owing to subunit acquisition and extension, complex I associates with a complex IV dimer, generating a wedge-shaped gap that serves as a binding site for complex II. Together with a tilted complex III dimer association, it results in a curved membrane region. Using molecular dynamics simulations, we demonstrate that the divergent supercomplex actively contributes to the membrane curvature induction and tubulation of cristae. Our findings highlight how the evolution of protein subunits of respiratory complexes has led to the I–II–III2–IV2 supercomplex that contributes to the shaping of the bioenergetic membrane, thereby enabling its functional specialization

National Category
Biophysics
Identifiers
urn:nbn:se:su:diva-217000 (URN)10.1038/s41586-023-05817-y (DOI)000957757400002 ()36949187 (PubMedID)2-s2.0-85150748874 (Scopus ID)
Available from: 2023-05-23 Created: 2023-05-23 Last updated: 2025-02-20Bibliographically approved
Tobiasson, V., Gahura, O., Aibara, S., Baradaran, R., Ziková, A. & Amunts, A. (2021). Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit. EMBO Journal, 40(6), Article ID e106292.
Open this publication in new window or tab >>Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit
Show others...
2021 (English)In: EMBO Journal, ISSN 0261-4189, E-ISSN 1460-2075, Vol. 40, no 6, article id e106292Article in journal (Refereed) Published
Abstract [en]

Mitoribosomes consist of ribosomal RNA and protein components, coordinated assembly of which is critical for function. We used mitoribosomes from Trypanosoma brucei with reduced RNA and increased protein mass to provide insights into the biogenesis of the mitoribosomal large subunit. Structural characterization of a stable assembly intermediate revealed 22 assembly factors, some of which have orthologues/counterparts/homologues in mammalian genomes. These assembly factors form a protein network that spans a distance of 180 angstrom, shielding the ribosomal RNA surface. The central protuberance and L7/L12 stalk are not assembled entirely and require removal of assembly factors and remodeling of the mitoribosomal proteins to become functional. The conserved proteins GTPBP7 and mt-EngA are bound together at the subunit interface in proximity to the peptidyl transferase center. A mitochondrial acyl-carrier protein plays a role in docking the L1 stalk, which needs to be repositioned during maturation. Additional enzymatically deactivated factors scaffold the assembly while the exit tunnel is blocked. Together, this extensive network of accessory factors stabilizes the immature sites and connects the functionally important regions of the mitoribosomal large subunit.

Keywords
assembly, mitochondria, mitoribosome, translation, trypanosoma
National Category
Biological Sciences
Identifiers
urn:nbn:se:su:diva-192572 (URN)10.15252/embj.2020106292 (DOI)000617216000001 ()33576519 (PubMedID)2-s2.0-85100839371 (Scopus ID)
Funder
Swedish Foundation for Strategic Research, FFL15:0325Ragnar Söderbergs stiftelse, M44/16Swedish Cancer Society, 2017/1041Knut and Alice Wallenberg Foundation, 2018.0080
Available from: 2021-04-28 Created: 2021-04-28 Last updated: 2022-08-11Bibliographically approved
Naschberger, A., Baradaran, R., Rupp, B. & Carroni, M. (2021). The structure of neurofibromin isoform 2 reveals different functional states. Nature, 599(7884), 315-319
Open this publication in new window or tab >>The structure of neurofibromin isoform 2 reveals different functional states
2021 (English)In: Nature, ISSN 0028-0836, E-ISSN 1476-4687, Vol. 599, no 7884, p. 315-319Article in journal (Refereed) Published
Abstract [en]

The autosomal dominant monogenetic disease neurofibromatosis type 1 (NF1) affects approximately one in 3,000 individuals and is caused by mutations in the NF1 tumour suppressor gene, leading to dysfunction in the protein neurofibromin (Nf1)(1,2). As a GTPase-activating protein, a key function of Nf1 is repression of the Ras oncogene signalling cascade. We determined the human Nf1 dimer structure at an overall resolution of 3.3 angstrom. The cryo-electron microscopy structure reveals domain organization and structural details of the Nf1 exon 23a splicing(3) isoform 2 in a closed, self-inhibited, Zn-stabilized state and an open state. In the closed conformation, HEAT/ARM core domains shield the GTPase-activating protein-related domain (GRD) so that Ras binding is sterically inhibited. In a distinctly different, open conformation of one protomer, a large-scale movement of the GRD occurs, which is necessary to access Ras, whereas Sec14-PH reorients to allow interaction with the cellular membrane(4). Zn incubation of Nf1 leads to reduced Ras-GAP activity with both protomers in the self-inhibited, closed conformation stabilized by a Zn binding site between the N-HEAT/ARM domain and the GRD-Sec14-PH linker. The transition between closed, self-inhibited states of Nf1 and open states provides guidance for targeted studies deciphering the complex molecular mechanism behind the widespread neurofibromatosis syndrome and Nf1 dysfunction in carcinogenesis.

National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:su:diva-202240 (URN)10.1038/s41586-021-04024-x (DOI)000713338100009 ()34707296 (PubMedID)2-s2.0-85117913865 (Scopus ID)
Available from: 2022-02-23 Created: 2022-02-23 Last updated: 2022-04-04Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-6096-9169

Search in DiVA

Show all publications