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Bernsel, Andreas
Publications (5 of 5) Show all publications
Bernsel, A., Viklund, H., Falk, J., Lindahl, E., von Heijne, G. & Elofsson, A. (2008). Prediction of membrane-protein topology from first principles. Proceedings of the National Academy of Sciences of the United States of America, 105(20), 7177-7181
Open this publication in new window or tab >>Prediction of membrane-protein topology from first principles
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2008 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 105, no 20, p. 7177-7181Article in journal (Refereed) Published
Keywords
Animals, Biophysics/*methods, Cell Membrane/*metabolism, Chemistry; Physical/methods, Databases; Protein, Lipids/chemistry, Membrane Proteins/*chemistry, Models; Statistical, Probability, Protein Binding, Protein Conformation, Protein Structure; Secondary, Proteomics/methods, Sequence Analysis; Protein, Thermodynamics
Identifiers
urn:nbn:se:su:diva-14850 (URN)10.1073/pnas.0711151105 (DOI)000256162900015 ()18477697 (PubMedID)
Available from: 2008-11-20 Created: 2008-11-20 Last updated: 2022-02-25Bibliographically approved
Bernsel, A., Viklund, H. & Elofsson, A. (2008). Remote homology detection of integral membrane proteins using conserved sequence features. Proteins: Structure, Function, and Bioinformatics, 71(3), 1387-1399
Open this publication in new window or tab >>Remote homology detection of integral membrane proteins using conserved sequence features
2008 (English)In: Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, E-ISSN 1097-0134, Vol. 71, no 3, p. 1387-1399Article in journal (Refereed) Published
Keywords
Conserved Sequence, Databases; Protein, Hydrophobicity, Markov Chains, Membrane Proteins/*chemistry, Sensitivity and Specificity, Sequence Alignment/*methods, Sequence Analysis; Protein/methods, Sequence Homology; Amino Acid
Identifiers
urn:nbn:se:su:diva-14855 (URN)10.1002/prot.21825 (DOI)000255269200028 ()18076048 (PubMedID)
Available from: 2008-11-20 Created: 2008-11-20 Last updated: 2022-02-25Bibliographically approved
Viklund, H., Bernsel, A., Skwark, M. & Elofsson, A. (2008). SPOCTOPUS: A combined predictor of signal peptides and membrane protein topology.. Bioinformatics, 24, 2928-2929
Open this publication in new window or tab >>SPOCTOPUS: A combined predictor of signal peptides and membrane protein topology.
2008 (English)In: Bioinformatics, ISSN 1460-2059, Vol. 24, p. 2928-2929Article in journal (Refereed) Published
Identifiers
urn:nbn:se:su:diva-14848 (URN)000261456700021 ()18945683 (PubMedID)
Available from: 2009-01-12 Created: 2009-01-12 Last updated: 2022-02-25Bibliographically approved
Médigue, C., Krin, E., Pascal, G., Barbe, V., Bernsel, A., Bertin, P. N., . . . Danchin, A. (2005). Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.. Genome Res, 15(10), 1325-35
Open this publication in new window or tab >>Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.
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2005 (English)In: Genome Res, ISSN 1088-9051, Vol. 15, no 10, p. 1325-35Article in journal (Refereed) Published
Keywords
Adaptation; Physiological/*genetics, Cold, Free Radical Scavengers, Genome; Bacterial, Molecular Sequence Data, Proteome, Pseudoalteromonas/*genetics/*physiology, RNA; Bacterial/chemistry/genetics, Reactive Oxygen Species
Identifiers
urn:nbn:se:su:diva-18884 (URN)16169927 (PubMedID)
Available from: 2007-12-27 Created: 2007-12-27 Last updated: 2022-02-25Bibliographically approved
Bernsel, A. & Von Heijne, G. (2005). Improved membrane protein topology prediction by domain assignments.. Protein Sci, 14(7), 1723-8
Open this publication in new window or tab >>Improved membrane protein topology prediction by domain assignments.
2005 (English)In: Protein Sci, ISSN 0961-8368, Vol. 14, no 7, p. 1723-8Article in journal (Refereed) Published
Keywords
Computational Biology, Eukaryotic Cells/*chemistry/metabolism, Genome, Membrane Proteins/*chemistry/metabolism, Proteome
Identifiers
urn:nbn:se:su:diva-18918 (URN)15987901 (PubMedID)
Available from: 2007-12-27 Created: 2007-12-27 Last updated: 2022-02-25Bibliographically approved
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