Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Benthic-pelagic coupling in a changing world: Structural and functional responses of microbenthic communities to organic matter settling
Stockholm University, Faculty of Science, Department of Ecology, Environment and Plant Sciences.ORCID iD: 0000-0002-7299-7263
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Marine soft sediments form the second largest habitat on the planet. Organisms residing in this environment represent a vast reservoir of biodiversity, and play key roles in ecosystem processes. Most benthic organisms depend on organic matter (OM) inputs from phytoplankton in the overlying water column as food supply, but human impacts such as eutrophication and climate change are profoundly altering natural ecosystem dynamics. The consequences of changes in benthic-pelagic coupling for the biodiversity and functioning of soft-sediment communities have yet to be resolved. 

The aim of this thesis is to assess the role of OM settling on soft-sediments microeukaryotic (small organisms < 1 mm) and bacterial communities. The intents are two-fold, to investigate impacts on (1) community structure and diversity (chapters I, II and IV); and (2) ecosystem functioning, notably in relation to nitrogen (N) cycling (chapters I and III). 

Our results show that settling OM quantity and quality both had a significant impact on microeukaryotic alpha-diversity. We observed a decrease in alpha-diversity following settling of diatom-derived spring bloom OM, possibly as a result of competitive exclusion, while cyanobacteria-derived summer bloom OM did not affect alpha-diversity (chapters I and IV). We also found that high biomass of diatoms and others fast sinking phytoplankton groups in the water column led to lower microeukaryotic alpha diversity after this material settled on the seafloor (chapter IV). Presumably, following this large sedimentation event, sediment oxygen (O2) demand was strongly stimulated, excluding O2-sensitive taxa. Overall, we propose that the assembly of microeukaryotic communities was primarily mediated by OM settling quantity (chapter IV), while differences in OM quality led to significant but more subtle changes, occurring at fine taxonomic level (chapter I). The response of bacterial communities to OM settling was less pronounced, and probably restricted to the uppermost sediment layer (chapters I and IV). We did, however, observe a significant effect of OM quality on bacterial communities assembly at the sediment-water interface, with taxa favored either by diatom- or by cyanobacteria-derived OM (chapter II). This study also showed that feedback mechanisms from nutrient recycling in the sediment could play a role in this response. Finally, our results indicated a substantial influence of OM quality on N cycling at the sediment-water interface. We found that settling of fresh OM (i.e. low C:N ratio) stimulated denitrification activity (chapters I and III), while simultaneously promoting more N recycling to the water column than settling of degraded OM (i.e. high C:N ratio) did (chapter III).  

Altogether, our results indicate that current changes in OM settling dynamics in marine systems will likely impact microeukaryotic and, to some extent, bacterial biodiversity in soft sediments. Alterations in settling OM quality, in particular, may also affect crucial microbial processes involved in N cycling. This thesis highlights the importance of considering benthic-pelagic coupling mechanisms to better understand likely future changes in marine ecosystems.

Place, publisher, year, edition, pages
Stockholm: Department of Ecology, Environment and Plant Sciences, Stockholm University , 2021. , p. 70
Keywords [en]
Soft sediments, benthic-pelagic coupling, organic matter export, meiofauna, nitrogen cycle, metabarcoding, Baltic Sea
National Category
Ecology Microbiology Oceanography, Hydrology and Water Resources Geochemistry
Research subject
Marine Ecology
Identifiers
URN: urn:nbn:se:su:diva-195026ISBN: 978-91-7911-532-6 (print)ISBN: 978-91-7911-533-3 (electronic)OAI: oai:DiVA.org:su-195026DiVA, id: diva2:1582419
Public defence
2021-09-17, Vivi Täckholmsalen (Q-salen), NPQ-huset, Svante Arrhenius väg 20, Stockholm, 09:30 (English)
Opponent
Supervisors
Available from: 2021-08-25 Created: 2021-08-01 Last updated: 2022-02-25Bibliographically approved
List of papers
1. Phytoplankton settling quality has a subtle but significant effect on sediment microeukaryotic and bacterial communities
Open this publication in new window or tab >>Phytoplankton settling quality has a subtle but significant effect on sediment microeukaryotic and bacterial communities
Show others...
(English)Manuscript (preprint) (Other academic)
Keywords
OM quality, RNA metabarcoding, microeukaryotes, bacteria, sediment, denitrification
National Category
Ecology
Research subject
Marine and Brackish Water Ecology; Microbiology; Biogeochemistry
Identifiers
urn:nbn:se:su:diva-195021 (URN)
Available from: 2021-08-01 Created: 2021-08-01 Last updated: 2022-02-25Bibliographically approved
2. Quality of phytoplankton deposition structures bacterial communities at the water-sediment interface
Open this publication in new window or tab >>Quality of phytoplankton deposition structures bacterial communities at the water-sediment interface
Show others...
2021 (English)In: Molecular Ecology, ISSN 0962-1083, E-ISSN 1365-294X, Vol. 30, no 14, p. 3515-3529Article in journal (Refereed) Published
Abstract [en]

Phytoplankton comprises a large fraction of the vertical carbon flux to deep water via the sinking of particulate organic matter (POM). However, despite the importance of phytoplankton in the coupling of benthic-pelagic productivity, the extent to which its deposition in the sediment affects bacterial dynamics at the water-sediment interface is poorly understood. Here, we conducted a microcosm experiment in which varying mixtures of diatom and cyanobacteria, representing phytoplankton-derived POM of differing quality, served as inputs to sediment cores. Characterization of 16S rRNA gene of the bacterial communities at the water-sediment interface showed that bacterial α-diversity was not affected by POM addition, while bacterial β-diversity changed significantly along the POM quality gradient, with the variation driven by changes in relative abundance rather than in taxon replacement. Analysing individual taxa abundances across the POM gradient revealed two distinct bacterial responses, in which taxa within either diatom- or cyanobacteria-favoured groups were more phylogenetically closely related to one another than other taxa found in the water. Moreover, there was little overlap in taxon identity between sediment and water communities, suggesting the minor role played by sediment bacteria in influencing the observed changes in bacterial communities in the overlying water. Together, these results showed that variability in phytoplankton-originated POM can impact bacterial dynamics at the water-sediment interface. Our findings highlight the importance of considering the potential interactions between phytoplankton and bacteria in benthic-pelagic coupling in efforts to understand the structure and function of bacterial communities under a changing climate.

Keywords
bacteria, particulate organic matter, phytoplankton blooms, The Baltic Sea, water-sediment interface
National Category
Ecology
Research subject
Marine Ecology; Microbiology
Identifiers
urn:nbn:se:su:diva-195020 (URN)10.1111/mec.15984 (DOI)
Funder
Swedish Research Council Formas, 2016-00804Swedish Research Council Formas, 2015-1320Swedish Environmental Protection Agency, NV-802-0151-18
Available from: 2021-08-01 Created: 2021-08-01 Last updated: 2022-02-25Bibliographically approved
3. Influence of settling organic matter quantity and quality on benthic nitrogen cycling
Open this publication in new window or tab >>Influence of settling organic matter quantity and quality on benthic nitrogen cycling
Show others...
2021 (English)In: Limnology and Oceanography, ISSN 0024-3590, E-ISSN 1939-5590, Vol. 66, no 5, p. 1882-1895Article in journal (Refereed) Published
Abstract [en]

Coastal sediments are major contributors to global carbon (C) mineralization and nutrient cycling and are tightly linked to processes in the pelagic environment. In this study, we aimed to investigate the regulating potential of quantity and quality of planktonic organic matter (OM) deposition on benthic metabolism, with a particular focus on nitrogen (N) cycling processes. We simulated inputs of spring (C : N 10.9) and summer (C : N 5.6) plankton communities in high and low quantities to sediment cores, and followed oxygen consumption, nutrient fluxes as well as nitrate reduction rates, that is, denitrification and dissimilatory nitrate reduction to ammonium for 10 d. Our results demonstrate the primary importance of OM quality in determining the fate of organic N once it settles to the sediment surface. Settling of N-rich summer plankton material resulted in a similar to twofold lower denitrification efficiency (40-56%) compared to N-poor spring plankton (88-115%). This indicates that N-rich plankton deposition favors recycling of inorganic nutrients to the water column over N-loss via denitrification. OM quantity was positively related to mineralization activity, but this neither directly affected N fluxes nor denitrification activity, highlighting the complex interplay between the OM quantity and quality in regulating N cycling. In light of these new findings, we support the use of simple qualitative indicators such as C : N ratio of OM to investigate how future changes in benthic-pelagic coupling might influence N budgets at the sediment-water interface.

National Category
Biological Sciences Earth and Related Environmental Sciences
Identifiers
urn:nbn:se:su:diva-194270 (URN)10.1002/lno.11730 (DOI)000637459500001 ()2-s2.0-85103615656 (Scopus ID)
Available from: 2021-06-17 Created: 2021-06-17 Last updated: 2025-01-31Bibliographically approved
4. Seasonality and drivers of microeukaryotic and bacterial communities in Baltic Sea soft sediments
Open this publication in new window or tab >>Seasonality and drivers of microeukaryotic and bacterial communities in Baltic Sea soft sediments
(English)Manuscript (preprint) (Other academic)
Keywords
DNA metabarcoding, benthic-pelagic coupling, microeukaryotes, meiofauna, bacteria, sediment
National Category
Ecology
Research subject
Marine and Brackish Water Ecology; Microbiology
Identifiers
urn:nbn:se:su:diva-195022 (URN)
Available from: 2021-08-01 Created: 2021-08-01 Last updated: 2022-02-25Bibliographically approved

Open Access in DiVA

Benthic-pelagic coupling in a changing world(8052 kB)820 downloads
File information
File name FULLTEXT01.pdfFile size 8052 kBChecksum SHA-512
e7ac22d7dd09c8e533ccdb55468263d32886f4259b54e158981198e98c30a434fa34dc42c5c70b5cebc5c302c60e26eb774e4dbc6d565de4ed79324b7883ff03
Type fulltextMimetype application/pdf

Authority records

Albert, Séréna

Search in DiVA

By author/editor
Albert, Séréna
By organisation
Department of Ecology, Environment and Plant Sciences
EcologyMicrobiologyOceanography, Hydrology and Water ResourcesGeochemistry

Search outside of DiVA

GoogleGoogle Scholar
Total: 821 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

isbn
urn-nbn

Altmetric score

isbn
urn-nbn
Total: 1782 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf