Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
On the accuracy of crystal structural analysis and the potential of unraveling structural details by 3D electron diffraction
Stockholm University, Faculty of Science, Department of Materials and Environmental Chemistry (MMK).ORCID iD: 0000-0001-9296-2423
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Knowing the atomic crystal structures of ordered porous solids is essential in understanding their behaviors and properties, developing new applications, and designing new porous materials. Electrons have a much shorter wavelength and much stronger interaction with atoms in a crystal compared with X-ray. Therefore, electron crystallography can effectively determine the structures of nano- and micro-sized crystals. Three-dimensional electron diffraction (3D ED) methods have been developed for the structure determination of various types of complex crystal structures. Continuous rotation electron diffraction (cRED) has unique aspects in both fast data collection and accurate structure determination. 

This thesis focused on the accuracy of crystal structure analysis and the potential of unraveling structural details by cRED. The cRED method was first applied for the ab initio structure determination of a beam-sensitive biocomposite metal-organic framework (MOF), BSA@ZIF-CO3-1. The atomic structure of BSA@ZIF-CO3-1 obtained by cRED was the same compared to that obtained by single crystal X-ray diffraction (SCXRD). Accurate atomic structures could be obtained by cRED. The sample of BSA@ZIF-CO3-1 was initially regarded as a pure new phase, however, during the cRED data collection and processing procedure, two distinct crystal systems and unit cells were revealed. BSA@ZIF-CO3-1  was identified as the major phase in the sample, and a new MOF, denoted ZIF-EC1, as the minor phase. ZIF-EC1 has a dense 3D framework with high N and Zn densities, which is a promising candidate for electrocatalysis. The discovery of ZIF-EC1 was followed by investigating the effects of improving 3D ED data completeness on the structural analysis. I successfully solved the structures of ZIF-EC1 from each individual dataset with the lowest completeness of 44.5% and refined to a high precession (better than 0.04 Å). Then I merged ten datasets to obtain a high data completeness, the structural model is improved, peaks appear more spherical in the electrostatic potential maps. 

The next part of this thesis was focused on unraveling structural details. By applying cRED, each non-Hydrogen atom from guest molecules can be separately localized from the difference Fourier map for two open framework germanates, SU-8 and SU-68. The atomic structure of both the framework and the guest molecules obtained by cRED is as reliable and accurate as that obtained by SCXRD. In the last part, the application of cRED into determining structures for new materials are highlighted. The structure of two new MOFs, Cd-MOF and Pb-MOF are successfully determined by cRED.

Place, publisher, year, edition, pages
Stockholm: Department of Materials and Environmental Chemistry, Stockholm University , 2021. , p. 73
Keywords [en]
electron crystallography, three-dimensional electron diffraction, metal-organic framework, open-framework germanates, guest molecules
National Category
Inorganic Chemistry
Research subject
Inorganic Chemistry
Identifiers
URN: urn:nbn:se:su:diva-195371ISBN: 978-91-7911-578-4 (print)ISBN: 978-91-7911-579-1 (electronic)OAI: oai:DiVA.org:su-195371DiVA, id: diva2:1584968
Public defence
2021-09-29, online via Zoom, public link is available at the department website, Stockholm, 10:00 (English)
Opponent
Supervisors
Available from: 2021-09-06 Created: 2021-08-15 Last updated: 2022-02-25Bibliographically approved
List of papers
1. Phase dependent encapsulation and release profile of ZIF-based biocomposites
Open this publication in new window or tab >>Phase dependent encapsulation and release profile of ZIF-based biocomposites
Show others...
2020 (English)In: Chemical Science, ISSN 2041-6520, E-ISSN 2041-6539, Vol. 11, no 13, p. 3397-3404Article in journal (Refereed) Published
Abstract [en]

Biocomposites composed of Zeolitic Imidazolate Frameworks (ZIFs) are generating significant interest due to their facile synthesis, and capacity to protect proteins from harsh environments. Here we systematically varied the composition (i.e. relative amounts of ligand (2-methylimidazole), metal precursor (Zn(OAc)(2)center dot 2H(2)O), and protein) and post synthetic treatments (i.e. washes with water or water/ethanol) to prepare a series of protein@ZIF biocomposites. These data were used to construct two ternary phase diagrams that showed the synthesis conditions employed gave rise to five different phases including, for the first time, biocomposites based on ZIF-CO3-1. We examined the influence of the different phases on two properties relevant to drug delivery applications: encapsulation efficiency and release profile. The encapsulation efficiencies of bovine serum albumin and insulin were phase dependent and ranged from 75% to 100%. In addition, release profiles showed that 100% protein release varied between 40 and 300 minutes depending on the phase. This study provides a detailed compositional map for the targeted preparation of ZIF-based biocomposites of specific phases and a tool for the straightforward analysis of the crystalline phases of ZIF based materials (web application named ZIF phase analysis). These data will facilitate the progress of ZIF bio-composites in the fields of biomedicine and biotechnology.

National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-181865 (URN)10.1039/c9sc05433b (DOI)000526696500017 ()
Available from: 2020-05-27 Created: 2020-05-27 Last updated: 2022-03-23Bibliographically approved
2. Can 3D electron diffraction provide accurate atomic structures of metal-organic frameworks?
Open this publication in new window or tab >>Can 3D electron diffraction provide accurate atomic structures of metal-organic frameworks?
Show others...
2021 (English)In: Faraday discussions, ISSN 1359-6640, E-ISSN 1364-5498, Vol. 225, no 0, p. 118-132Article in journal (Refereed) Published
Abstract [en]

Many framework materials such as metal–organic frameworks (MOFs) or porous coordination polymers (PCPs) are synthesized as polycrystalline powders, which are too small for structure determination by single crystal X-ray diffraction (SCXRD). Here, we show that a three-dimensional (3D) electron diffraction method, namely continuous rotation electron diffraction (cRED), can be used for ab initio structure determination of such materials. As an example, we present the complete structural analysis of a biocomposite, denoted BSA@ZIF-CO3-1, in which Bovine Serum Albumin (BSA) was encapsulated in a zeolitic imidazolate framework (ZIF). Low electron dose was combined with ultrafast cRED data collection to minimize electron beam damage to the sample. We demonstrate that the atomic structure obtained by cRED is as reliable and accurate as that obtained by single crystal X-ray diffraction. The high accuracy and fast data collection open new opportunities for investigation of cooperative phenomena in framework structures at the atomic level.

National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-193304 (URN)10.1039/d0fd00015a (DOI)000615744200026 ()33118574 (PubMedID)
Available from: 2021-05-20 Created: 2021-05-20 Last updated: 2022-09-15Bibliographically approved
3. High-Throughput Electron Diffraction Reveals a Hidden Novel Metal-Organic Framework for Electrocatalysis
Open this publication in new window or tab >>High-Throughput Electron Diffraction Reveals a Hidden Novel Metal-Organic Framework for Electrocatalysis
Show others...
2021 (English)In: Angewandte Chemie International Edition, ISSN 1433-7851, E-ISSN 1521-3773, Vol. 60, no 20, p. 11391-11397Article in journal (Refereed) Published
Abstract [en]

Metal-organic frameworks (MOFs) are known for their versatile combination of inorganic building units and organic linkers, which offers immense opportunities in a wide range of applications. However, many MOFs are typically synthesized as multiphasic polycrystalline powders, which are challenging for studies by X-ray diffraction. Therefore, developing new structural characterization techniques is highly desired in order to accelerate discoveries of new materials. Here, we report a high-throughput approach for structural analysis of MOF nano- and sub-microcrystals by three-dimensional electron diffraction (3DED). A new zeolitic-imidazolate framework (ZIF), denoted ZIF-EC1, was first discovered in a trace amount during the study of a known ZIF-CO3-1 material by 3DED. The structures of both ZIFs were solved and refined using 3DED data. ZIF-EC1 has a dense 3D framework structure, which is built by linking mono- and bi-nuclear Zn clusters and 2-methylimidazolates (mIm(-)). With a composition of Zn-3(mIm)(5)(OH), ZIF-EC1 exhibits high N and Zn densities. We show that the N-doped carbon material derived from ZIF-EC1 is a promising electrocatalyst for oxygen reduction reaction (ORR). The discovery of this new MOF and its conversion to an efficient electrocatalyst highlights the power of 3DED in developing new materials and their applications.

Keywords
continuous rotation electron diffraction, electrocatalysis, high throughput structural analysis, metal&#8211, organic frameworks, three-dimensional electron diffraction
National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-193038 (URN)10.1002/anie.202016882 (DOI)000637486100001 ()33682282 (PubMedID)
Available from: 2021-05-10 Created: 2021-05-10 Last updated: 2022-02-25Bibliographically approved
4. On the completeness of three-dimensional electron diffraction data for structural analysis of metal-organic frameworks
Open this publication in new window or tab >>On the completeness of three-dimensional electron diffraction data for structural analysis of metal-organic frameworks
Show others...
2021 (English)In: Faraday discussions, ISSN 1359-6640, E-ISSN 1364-5498, Vol. 231Article in journal (Refereed) Published
Abstract [en]

Three-dimensional electron diffraction (3DED) has been proven as an effective and accurate method for structure determination of nano-sized crystals. In the past decade, the crystal structures of various new complex metal-organic frameworks (MOFs) have been revealed by 3DED, which has been the key to understand their properties. However, due to the design of transmission electron microscopes (TEMs), one drawback of 3DED experiments is the limited tilt range of goniometers, which often leads to incomplete 3DED data, particularly when the crystal symmetry is low. This drawback can be overcome by high throughput data collection using continuous rotation electron diffraction (cRED), where data from a large number of crystals can be collected and merged. Here, we investigate the effects of improving completeness on structural analysis of MOFs. We use ZIF-EC1, a zeolitic imidazolate framework (ZIF), as an example. ZIF-EC1 crystallizes in a monoclinic system with a plate-like morphology. cRED data of ZIF-EC1 with different completeness and resolution were analyzed. The data completeness increased to 92.0% by merging ten datasets. Although the structures could be solved from individual datasets with a completeness as low as 44.5% and refined to a high precision (better than 0.04 angstrom), we demonstrate that a high data completeness could improve the structural model, especially on the electrostatic potential map. We further discuss the strategy adopted during data merging. We also show that ZIF-EC1 doped with cobalt can act as an efficient electrocatalyst for oxygen reduction reactions.

National Category
Inorganic Chemistry
Identifiers
urn:nbn:se:su:diva-195367 (URN)10.1039/D1FD00020A (DOI)000669964900001 ()
Available from: 2021-08-15 Created: 2021-08-15 Last updated: 2022-09-15Bibliographically approved
5. Direct Location of Guest Molecules in Open-Framework Materials by Three-Dimensional Electron Diffraction
Open this publication in new window or tab >>Direct Location of Guest Molecules in Open-Framework Materials by Three-Dimensional Electron Diffraction
(English)Manuscript (preprint) (Other academic)
National Category
Inorganic Chemistry
Identifiers
urn:nbn:se:su:diva-195369 (URN)
Available from: 2021-08-15 Created: 2021-08-15 Last updated: 2022-02-25Bibliographically approved
6. Three-Dimensional Electron Diffraction Structures of Beam Sensitive Metal-Organic Frameworks
Open this publication in new window or tab >>Three-Dimensional Electron Diffraction Structures of Beam Sensitive Metal-Organic Frameworks
(English)Manuscript (preprint) (Other academic)
National Category
Inorganic Chemistry
Identifiers
urn:nbn:se:su:diva-195370 (URN)
Available from: 2021-08-15 Created: 2021-08-15 Last updated: 2022-02-25Bibliographically approved

Open Access in DiVA

On the accuracy of crystal structural analysis and the potential of unraveling structural details by 3D electron diffraction(6846 kB)519 downloads
File information
File name FULLTEXT01.pdfFile size 6846 kBChecksum SHA-512
bf5ba5f95d1f696e02c1a165d3d0f2dbbcf5b73738c4a39af10abd3cee4e9f0b8a3db17f0eeca080f7e9c8454caed4ad9c3fc2d4b1dd4eaf7b20f7b69ff5334c
Type fulltextMimetype application/pdf

Authority records

Ge, Meng

Search in DiVA

By author/editor
Ge, Meng
By organisation
Department of Materials and Environmental Chemistry (MMK)
Inorganic Chemistry

Search outside of DiVA

GoogleGoogle Scholar
Total: 523 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

isbn
urn-nbn

Altmetric score

isbn
urn-nbn
Total: 1721 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf