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Regulation of Proteostasis and Stress Response: Insights into Hsf1 and Chaperone Dynamics
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Protein homeostasis (proteostasis) refers to the balance between protein production, folding, and degradation, and is coordinated by components of the proteostasis network. Preserving cellular proteins in their native, folded, and active state is vital to proteostasis and, therefore, essential for cell viability.

Stress induces perturbations in the proteome, leading to the accumulation of misfolded proteins and toxic aggregates. The heat shock response (HSR) is a central eukaryotic stress-responsive pathway mediated by Heat Shock Factor 1 (Hsf1), which is activated in response to various stressors. Hsf1 leads the expression of the crucial proteostasis factors, particularly heat shock proteins (HSPs), in order to build an effective response against stress and restore the equilibrium. The overall aim of the work presented in this thesis is to elucidate the role of Hsf1 and the impact of Hsp70 and misfolded proteins on its regulation, using Saccharomyces cerevisiae and human cells as models.

   In Study I, we describe a transcriptional stress response pathway triggered by protein misfolding, which is uniquely sensed by Hsf1 in yeast. Using a hsf1Δ strain, we show that while Hsf1 plays an important role in maintaining protein homeostasis under basal conditions, it is not essential for driving an effective response to heat stress. However, it is the sole transcription factor responsible for initiating a stress response against the accumulation of misfolded proteins, relieving Hsf1 from negative regulation by Hsp70. In Study II, we demonstrate that HSF1-HSP70 chaperone titration is conserved in human. Specifically, high levels of HSP70 reduce HSF1 DNA-binding capacity in vitro. Moreover, the addition of misfolded proteins in vitro or the induction of misfolding of newly synthesized proteins by feeding HEK293T cells a proteotoxic proline analog titrates HSP70, thereby activating HSF1. 

   In Study III, we discover a new dedicated chaperone, Chp1, which interacts with the ribosome to assist in the synthesis of the first domain of eEF1A. Additionally, we show that deletion of Chp1 leads to the production of nonfunctional eEF1A, immediately degraded, and to induction of the heat shock response. 

Finally, in Study IV, we develop a new strategy for delivering HSP70 into cells using a cell-penetrating peptide, PepFect14. We show that PepFect14 forms a complex with HSP70 to facilitate its delivery into cells. This interaction does not impair HSP70 activity, which is biologically available in the cytoplasm. Protein delivery using PepFect14 could represent a valid method for increasing chaperone levels in diseases associated with the formation of aggregates.

   Overall, the findings presented in this thesis enhance our understanding of how cells manage their response to stress through the regulation of Hsf1 and protein folding. Moreover, they provide new tools for future proteostasis studies and potential therapeutic applications.

Place, publisher, year, edition, pages
Stockholm: Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University , 2024. , p. 68
Keywords [en]
proteostasis, heat shock proteins, stress, protein misfolding, heat shock response, Hsf1, Hsp70, Chp1, eEF1A, PepFect14, HEK293T, Saccharomyces cerevisiae
National Category
Biochemistry and Molecular Biology
Research subject
Molecular Bioscience
Identifiers
URN: urn:nbn:se:su:diva-232814ISBN: 978-91-8014-909-9 (print)ISBN: 978-91-8014-910-5 (electronic)OAI: oai:DiVA.org:su-232814DiVA, id: diva2:1892218
Public defence
2024-10-11, Hörsal 6, Södra huset, hus C, Frescativägen 10C, Stockholm, 09:30 (English)
Opponent
Supervisors
Available from: 2024-09-18 Created: 2024-08-26 Last updated: 2024-09-09Bibliographically approved
List of papers
1. Genetic inactivation of essential HSF1 reveals an isolated transcriptional stress response selectively induced by protein misfolding
Open this publication in new window or tab >>Genetic inactivation of essential HSF1 reveals an isolated transcriptional stress response selectively induced by protein misfolding
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2023 (English)In: Molecular Biology of the Cell, ISSN 1059-1524, E-ISSN 1939-4586, Vol. 34, no 11, article id ar101Article in journal (Refereed) Published
Abstract [en]

Heat Shock Factor 1 (Hsf1) in yeast drives the basal transcription of key proteostasis factors and its activity is induced as part of the core heat shock response. Exploring Hsf1 specific functions has been challenging due to the essential nature of the HSF1 gene and the extensive overlap of target promoters with environmental stress response (ESR) transcription factors Msn2 and Msn4 (Msn2/4). In this study, we constructed a viable hsf1 increment strain by replacing the HSF1 open reading frame with genes that constitutively express Hsp40, Hsp70, and Hsp90 from Hsf1-independent promoters. Phenotypic analysis showed that the hsf1 increment strain grows slowly, is sensitive to heat as well as protein misfolding and accumulates protein aggregates. Transcriptome analysis revealed that the transcriptional response to protein misfolding induced by azetidine-2-carboxylic acid is fully dependent on Hsf1. In contrast, the hsf1 increment strain responded to heat shock through the ESR. Following HS, Hsf1 and Msn2/4 showed functional compensatory induction with stronger activation of the remaining stress pathway when the other branch was inactivated. Thus, we provide a long-overdue genetic test of the function of Hsf1 in yeast using the novel hsf1 increment construct. Our data highlight that the accumulation of misfolded proteins is uniquely sensed by Hsf1-Hsp70 chaperone titration inducing a highly selective transcriptional stress response.

National Category
Biochemistry and Molecular Biology
Identifiers
urn:nbn:se:su:diva-223766 (URN)10.1091/mbc.E23-05-0153 (DOI)001085485400001 ()37467033 (PubMedID)2-s2.0-85168240028 (Scopus ID)
Available from: 2023-11-15 Created: 2023-11-15 Last updated: 2024-08-26Bibliographically approved
2. Protein Misfolding Releases Human HSF1 from HSP70 Latency Control
Open this publication in new window or tab >>Protein Misfolding Releases Human HSF1 from HSP70 Latency Control
2024 (English)In: Journal of Molecular Biology, ISSN 0022-2836, E-ISSN 1089-8638, Vol. 436, no 20, article id 168740Article in journal (Refereed) Published
Abstract [en]

Heat shock factor 1 (HSF1) responds to stress to mount the heat shock response (HSR), a conserved transcriptional program that allows cells to maintain proteostasis by upregulating heat shock proteins (HSPs). The homeostatic stress regulation of HSF1 plays a key role in human physiology and health but its mechanism has remained difficult to pinpoint. Recent work in the budding yeast model has implicated stress-inducible chaperones of the HSP70 family as direct negative regulators of HSF1 activity. Here, we have investigated the latency control and activation of human HSF1 by HSP70 and misfolded proteins. Purified oligomeric HSF1-HSP70 (HSPA1A) complexes exhibited basal DNA binding activity that was inhibited by increasing the levels of HSP70 and, importantly, misfolded proteins reverted the inhibitory effect. Using site-specific UV photo-crosslinking, we monitored HSP70-HSF1 complexes in HEK293T cells. While HSF1 was bound by the substrate binding domain of HSP70 in unstressed cells, activation of HSF1 by heat shock as well as by inducing the misfolding of newly synthesized proteins resulted in release of HSF1 from the chaperone. Taken our results together, we conclude that latent HSF1 populate dynamic complexes with HSP70, which are sensitive to increased levels of misfolded proteins that compete for binding to the HSP70 substrate binding domain. Thus, human HSF1 is activated by various stress conditions that all titrate available HSP70.

Keywords
Proteostasis, heat shock response, heat shock factor 1, heat shock protein 70, protein misfolding
National Category
Biochemistry and Molecular Biology
Identifiers
urn:nbn:se:su:diva-232554 (URN)10.1016/j.jmb.2024.168740 (DOI)
Available from: 2024-08-19 Created: 2024-08-19 Last updated: 2024-08-26Bibliographically approved
3. Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis
Open this publication in new window or tab >>Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis
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2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, article id 1382Article in journal (Refereed) Published
Abstract [en]

Cotranslational protein folding depends on general chaperones that engage highly diverse nascent chains at the ribosomes. Here we discover a dedicated ribosome-associated chaperone, Chp1, that rewires the cotranslational folding machinery to assist in the challenging biogenesis of abundantly expressed eukaryotic translation elongation factor 1A (eEF1A). Our results indicate that during eEF1A synthesis, Chp1 is recruited to the ribosome with the help of the nascent polypeptide-associated complex (NAC), where it safeguards eEF1A biogenesis. Aberrant eEF1A production in the absence of Chp1 triggers instant proteolysis, widespread protein aggregation, activation of Hsf1 stress transcription and compromises cellular fitness. The expression of pathogenic eEF1A2 variants linked to epileptic-dyskinetic encephalopathy is protected by Chp1. Thus, eEF1A is a difficult-to-fold protein that necessitates a biogenesis pathway starting with dedicated folding factor Chp1 at the ribosome to protect the eukaryotic cell from proteostasis collapse.

Keywords
Chaperones, Mechanisms of disease, Protein aggregation
National Category
Biochemistry and Molecular Biology
Identifiers
urn:nbn:se:su:diva-232552 (URN)10.1038/s41467-024-45645-w (DOI)001255007500001 ()38360885 (PubMedID)2-s2.0-85185236115 (Scopus ID)
Funder
Swedish Research Council, 2019-04052Swedish Cancer Society, 20 1045
Available from: 2024-08-19 Created: 2024-08-19 Last updated: 2024-08-26Bibliographically approved
4. Transfection of Heat Shock Protein 70 kDa (HSP70)
Open this publication in new window or tab >>Transfection of Heat Shock Protein 70 kDa (HSP70)
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2022 (English)In: International Journal of Peptide Research and Therapeutics, E-ISSN 1573-3904, Vol. 28, no 4, article id 105Article in journal (Refereed) Published
Abstract [en]

Heat shock protein 70 kDa (HSP70) is a major protein family in the cell protections against stress-induced denaturation and aggregation and in the folding of nascent proteins. It is a highly conserved protein that can be found in most organisms and is strongly connected to several intracellular pathways such as protein folding and refolding, protein degradation and regulation, and protection against intense stress. Cellular delivery of HSP70 would be of high impact for clarification of its role in these cellular processes.

PepFect14 is a cell-penetrating peptide known to be able to mediate the transfection of various oligonucleotides to multiple cell lines with a higher efficacy than most commercially available transfection agents and without inducing significant toxic effects.

In this study we demonstrated that PepFect14 was able to form a complex with HSP70 and to deliver it inside cells in the same fashion with oligonucleotide delivery. The delivered HSP70 showed an effect in the cell regulation indicating that the protein was biologically available in the cytoplasm and the interactions with PepFect14 did not impeach its active sites once the plasma barrier crossed.

This study reports the first successful delivery of HSP70 to our knowledge and the first protein transfection mediated by PepFect14. It opens new fields of research for both PepFect14 as a delivery agent and HSP70 as a therapeutic agent; with potential in peptide aggregation caused diseases such as Parkinson’s and Alzheimer’s diseases.

Keywords
Cell-penetrating peptide, Transfection, PepFect14, HSP70
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:su:diva-205131 (URN)10.1007/s10989-022-10416-y (DOI)000799458300001 ()
Available from: 2022-05-31 Created: 2022-05-31 Last updated: 2024-08-26Bibliographically approved

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