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The virtual tumour - in silico modelling of tumour vasculature, oxygenation and treatment outcome
Stockholm University, Faculty of Science, Department of Physics. Karolinska Institutet, Department of Oncology-Pathology.ORCID iD: 0000-0001-7590-6809
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Poor tumour oxygenation, namely hypoxia, is one of the major challenges that has been recognised in radiotherapy, yet it is not being accounted for in standard treatments. Hypoxia, resulting from a heterogeneous distribution of vessels (chronic hypoxia) or a loss in vascular perfusion (acute hypoxia), affects all kinds of solid tumours to different extents. Although over-sustained angiogenesis with vascular remodelling is one of the key hallmarks of cancer, the resulting tumour vasculature is often frail and lacking an organised structure, hence incapable of maintaining the same nutrients and oxygen supply standards of healthy vascular networks.

Tumour hypoxia correlates with worse disease prognoses when compared to normoxic tumours. Indeed, hypoxic cells require an up to three times higher radiation dose than normoxic tissues to achieve the same biological effect. However, many of its biological aspects remain only partially understood.

From this perspective, in silico modelling of the tumour key radiobiological features could instead represent a new frontier, as unprecedented computational power and numerical optimisation routines permit to expand virtually the set of possible microenvironmental situations, with simulations of real treatments and concurrent intercomparison of hypothetical scenarios. The fact that the real vascular anatomy of a deep-seated tumour is not fully accessible – and hence not precisely modellable – could be compensated by a large record of heterogeneous oxygenation patterns provided by the model, with inherent best- and worst- case studies. At the same time, in silico modelling would not replace in vivo functional imaging, but would rather act in synergy with that as an additional layer of study: based on the macroscopic information that for instance positron emission tomography or magnetic resonance imaging could offer, the underlying microscopic radiobiological nature of the tumour could be simulated.

This thesis consists of four published papers and an introductory overview of the topics, which provide the background needed for their basic understanding. Beginning with an account of tumour hypoxia and its radiobiological causes and implications for the outcome of radiotherapeutic treatments, the computational modelling aspects of hypoxia are also examined.  As the core of a comprehensive project developed during the PhD work, a novel three-dimensional radiobiological model of the vasculature and oxygenation is presented, including its application to treatment scenarios.

Since one of the main aims of this model is its implementation into a treatment planning system, a proof-of-concept of such integration will be presented, having in sight more clinically oriented studies of the efficacy of various treatment scenarios in terms of underlying tumour oxygenation and treatment choices regarding beam quality, fractionation, and total dose. Examples of these studies were performed in silico, with the support of High Performance Computing centres that could allow, among other things, the increase in size of the modelled tumours, and the development of a concept emerging nowadays, that of (in silico) virtual clinical trials, potentially enhancing considerably the current status of clinical trials.

Possible applications of the tumour model extended to other medical fields are also envisioned in this thesis. Finally, an outlook on the stages reached so far is given, with the aim of showing and with the hope that good ground has been paved for the goal of a better accounting of tumour hypoxia in the future. 

Place, publisher, year, edition, pages
Department of Physics, Stockholm University , 2024. , p. 81
Keywords [en]
tumour hypoxia, radiotherapy, computational modelling, radiobiology, vasculature, radiosensitivity, high performance computing, virtual clinical trials
National Category
Cancer and Oncology
Research subject
Medical Radiation Physics
Identifiers
URN: urn:nbn:se:su:diva-235271ISBN: 978-91-8107-024-8 (print)ISBN: 978-91-8107-025-5 (electronic)OAI: oai:DiVA.org:su-235271DiVA, id: diva2:1910622
Public defence
2024-12-19, Cancer Centrum Karolinska (CCK) lecture hall, Visionsgatan 56, Karolinska Hospital, Solna, 09:00 (English)
Opponent
Supervisors
Available from: 2024-11-26 Created: 2024-11-05 Last updated: 2024-11-19Bibliographically approved
List of papers
1. Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation
Open this publication in new window or tab >>Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation
2022 (English)In: Journal of Theoretical Biology, ISSN 0022-5193, E-ISSN 1095-8541, Vol. 547, article id 111175Article in journal (Refereed) Published
Abstract [en]

Purpose: Tumor oxygenation is one of the key features influencing the response of cells to radiation and chemo therapies. This study presents a novel in silico tumor model simulating realistic 3D microvascular structures and related oxygenation maps, featuring regions with different levels and typologies of hypoxia (chronic, acute and anemic). Such model, if integrated into a treatment planning system, could allow evaluations and comparisons of various scenarios when deciding the therapy to administer. Methods and Materials: Spherical tumors between 0.6 and 1.5 cm in diameter encompassed uniformly by vascular trees generated starting from pseudo-fractal principles were simulated with a voxel resolution of 10 µm. The approach ensures a continuous transition from a well-perfused rim to a core with poor vascularization. The oxygen diffusion equation in the tumor is solved by a finite difference method. Several quantities, such as the fractal dimension (FD), the microvascular density (MVD) and the hypoxic fraction (HF) were assessed and compared. Results: Different tumors with various degrees of chronic hypoxia were simulated by varying the tumor size and the number of bifurcations in the vascular networks. The simulations showed that for the case of chronically hypoxic tumors, in well-oxygenated volumes FD = 2.53 ± 0.07, MVD = 3460 ± 2180 vessels/mm3 and HF = 4.0 ± 3.4%, while in hypoxic volumes FD = 2.34 ± 0.09, MVD = 365 ± 156 vessels/mm3, HF = 49.8 ± 18.3%. The superimposition of acute or anemic hypoxia accentuated the oxygen deprivation in the core of the volumes. Conclusions: Tumors varying in diameter and extension of their vasculature were simulated, showing features that define two distinctive subvolumes in terms of oxygenation. The model could be regarded as a testbed for simulations of key radiobiological features governing the tumor response to radio- and chemotherapy and thus for treatment outcome simulations.

Keywords
Hypoxia, Tumor, Oxygenation, Radiobiology, Radiotherapy, Radioresistance
National Category
Biological Sciences Cancer and Oncology
Identifiers
urn:nbn:se:su:diva-208410 (URN)10.1016/j.jtbi.2022.111175 (DOI)000809634400003 ()35644483 (PubMedID)2-s2.0-85131114869 (Scopus ID)
Available from: 2022-08-29 Created: 2022-08-29 Last updated: 2024-11-05Bibliographically approved
2. Perfusion-Limited Hypoxia Determines the Outcome of Radiation Therapy of Hypoxic Tumours
Open this publication in new window or tab >>Perfusion-Limited Hypoxia Determines the Outcome of Radiation Therapy of Hypoxic Tumours
2022 (English)In: Oxygen Transport to Tissue XLIII / [ed] Felix Scholkmann; Joseph LaManna; Ursula Wolf, Cham: Springer, 2022, p. 249-254Conference paper, Published paper (Refereed)
Abstract [en]

Despite advancements in functional imaging, the resolution of modern techniques is still limited with respect to the tumour microenvironment. Radiotherapy strategies to counteract e.g., tumour hypoxia based on functional imaging therefore carry an inherent uncertainty that could compromise the outcome of the treatment. It was the aim of this study to investigate the impact of variations in the radiosensitivity of hypoxic tumours in small regions in comparison to the resolution of current imaging techniques on the probability of obtaining tumour control. A novel in silico model of three-dimensional tumour vasculature and oxygenation was used to model three tumours with different combinations of diffusion-limited, perfusion-limited and anaemic hypoxia. Specifically, cells in the transition region from a tumour core with diffusion-limited hypoxia to the well-oxygenated tumour rim were considered with respect to their differential radiosensitivity depending on the character of the hypoxia. The results showed that if the cells in the transition region were under perfusion-limited hypoxia, the tumour control probability was substantially lower in comparison to the case when the cells were anaemic (or under diffusion-limited hypoxia). This study therefore demonstrates the importance of differentiating between different forms of hypoxia on a scale currently unattainable to functional imaging techniques, lending support to the use and importance of radiobiological modelling of the cellular radiosensitivity and response at microscale.

Place, publisher, year, edition, pages
Cham: Springer, 2022
Series
Advances in Experimental Medicine and Biology, ISSN 0065-2598, E-ISSN 2214-8019 ; 1395
Keywords
Radiotherapy, Radioresistance, Oxygen enhancement ratio (OER), In silico model
National Category
Cancer and Oncology Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:su:diva-219191 (URN)10.1007/978-3-031-14190-4_41 (DOI)000917128900042 ()36527645 (PubMedID)2-s2.0-85144587657 (Scopus ID)978-3-031-14189-8 (ISBN)978-3-031-14190-4 (ISBN)
Conference
48th Annual Meeting of the International Society on Oxygen Transport to Tissue (ISOTT 2021), online, 2023
Available from: 2023-07-13 Created: 2023-07-13 Last updated: 2024-11-05Bibliographically approved
3. The Impact of Heterogeneous Cell Density in Hypoxic Tumors Treated with Radiotherapy
Open this publication in new window or tab >>The Impact of Heterogeneous Cell Density in Hypoxic Tumors Treated with Radiotherapy
2023 (English)In: Advances in Experimental Medicine and Biology, ISSN 0065-2598, E-ISSN 2214-8019, Vol. 1438, p. 121-126Article in journal (Refereed) Published
Abstract [en]

Hypoxia is frequently found in solid tumors and is known to increase the resistance to several kinds of treatment modalities including radiation therapy. Besides, the treatment response is also largely determined by the total number of clonogenic cells, i.e., cells with unlimited proliferative capacity. Depending on the duration of hypoxia, the rate of proliferation and hence also the clonogen density could be expected to differ in hypoxic compartments. The combination at the microscale between heterogeneous tumor oxygenation and clonogen density could therefore be crucial with respect to the outcome of a radiotherapy treatment. In this study it was investigated the impact of heterogeneous clonogen density on the outcome of stereotactic radiotherapy treatments of hypoxic tumors. A recently developed three-dimensional model for tissue vasculature and oxygenation was used to create realistic in silico tumors with heterogeneous oxygenation. Stereotactic radiotherapy treatments were simulated, and cell survival was calculated on a voxel-level accounting for the oxygenation. For a tumor with a diameter of 1 cm and a baseline clonogenic density of 107/cm3 for the normoxic subvolume, when the relative density for the hypoxic cells drops by a factor of 10 the tumor control probability (TCP) decreases by about 10% when relatively small hypoxic volumes and few fractions are considered; longer treatments tend to level out the results. With increasing size of the hypoxic subvolume, the TCP decreased overall as expected, and the difference in TCP between a homogeneous and a heterogeneous distribution of cells increased. The results demonstrate a delicate interplay between the heterogeneous distribution of tumor oxygenation and clonogenic cells that could significantly impact on the treatment outcome of radiotherapy.

Keywords
Hypoxia, Tumors, Radiotherapy
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:su:diva-227194 (URN)10.1007/978-3-031-42003-0_20 (DOI)37845450 (PubMedID)2-s2.0-85175587215 (Scopus ID)
Available from: 2024-03-04 Created: 2024-03-04 Last updated: 2024-11-05Bibliographically approved
4. Hypoxia dose painting in SBRT - the virtual clinical trial approach
Open this publication in new window or tab >>Hypoxia dose painting in SBRT - the virtual clinical trial approach
2023 (English)In: Acta Oncologica, ISSN 0284-186X, E-ISSN 1651-226X, Vol. 62, no 10, p. 1239-1245Article in journal (Refereed) Published
Abstract [en]

Background: Treating hypoxic tumours remains a challenge in radiotherapy as hypoxia leads to enhanced tumour aggressiveness and resistance to radiation. As escalating the doses is rarely feasible within the healthy tissue constraints, dose-painting strategies have been explored. Consensus about the best of care for hypoxic tumours has however not been reached because, among other reasons, the limits of current functional in-vivo imaging systems in resolving the details and dynamics of oxygen transport in tissue. Computational modelling of the tumour microenvironment enables the design and conduction of virtual clinical trials by providing relationships between biological features and treatment outcomes. This study presents a framework for assessing the therapeutic influence of the individual characteristics of the vasculature and the resulting oxygenation of hypoxic tumours in a virtual clinical trial on dose painting in stereotactic body radiotherapy (SBRT) circumventing the limitations of the imaging systems.

Material and methods: The homogeneous doses required to overcome hypoxia in simulated SBRT treatments of 1, 3 or 5 fractions were calculated for tumours with heterogeneous oxygenation derived from virtual vascular networks. The tumour control probability (TCP) was calculated for different scenarios for oxygenation dynamics resulting on cellular reoxygenation.

Results: A three-fractions SBRT treatment delivering 41.9 Gy (SD 2.8) and 26.5 Gy (SD 0.1) achieved only 21% (SD 12) and 48% (SD 17) control in the hypoxic and normoxic subvolumes, respectively whereas fast reoxygenation improved the control by 30% to 50%. TCP values for the individual tumours with similar characteristics, however, might differ substantially, highlighting the crucial role of the magnitude and time evolution of hypoxia at the microscale.

Conclusion: The results show that local microvascular heterogeneities may affect the predicted outcome in the hypoxic core despite escalated doses, emphasizing the role of theoretical modelling in understanding of and accounting for the dominant factors of the tumour microenvironment.

Keywords
Tumour hypoxia, virtual clinical trial, modelling, dose painting, SBRT, SRT
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:su:diva-222186 (URN)10.1080/0284186X.2023.2258272 (DOI)001065947100001 ()37713263 (PubMedID)2-s2.0-85171157919 (Scopus ID)
Available from: 2023-10-18 Created: 2023-10-18 Last updated: 2024-11-05Bibliographically approved

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