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Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Stockholm University, Science for Life Laboratory (SciLifeLab).ORCID iD: 0000-0003-4656-3362
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. Stockholm University, Science for Life Laboratory (SciLifeLab). University of Tokyo, Japan.ORCID iD: 0000-0001-7802-5572
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Number of Authors: 142024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, article id 4272Article in journal (Refereed) Published
Abstract [en]

The mitoribosome translates mitochondrial mRNAs and regulates energy conversion that is a signature of aerobic life forms. We present a 2.2 Å resolution structure of human mitoribosome together with validated mitoribosomal RNA (rRNA) modifications, including aminoacylated CP-tRNAVal. The structure shows how mitoribosomal proteins stabilise binding of mRNA and tRNA helping to align it in the decoding center, whereas the GDP-bound mS29 stabilizes intersubunit communication. Comparison between different states, with respect to tRNA position, allowed us to characterize a non-canonical L1 stalk, and molecular dynamics simulations revealed how it facilitates tRNA transitions in a way that does not require interactions with rRNA. We also report functionally important polyamines that are depleted when cells are subjected to an antibiotic treatment. The structural, biochemical, and computational data illuminate the principal functional components of the translation mechanism in mitochondria and provide a description of the structure and function of the human mitoribosome.

Place, publisher, year, edition, pages
2024. Vol. 15, article id 4272
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Biochemistry Molecular Biology
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URN: urn:nbn:se:su:diva-235476DOI: 10.1038/s41467-024-48163-xISI: 001228176400005PubMedID: 38769321Scopus ID: 2-s2.0-85193697648OAI: oai:DiVA.org:su-235476DiVA, id: diva2:1915017
Available from: 2024-11-21 Created: 2024-11-21 Last updated: 2025-02-20Bibliographically approved

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Singh, VivekItoh, YuzuruNaschberger, AndreasAibara, ShintaroAmunts, Alexey

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