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Safeguarding Proteostasis Through Cotranslational Protein Folding: Discovery of a Specialized Ribosome-Associated Chaperone for eEF1A
Stockholm University, Faculty of Science, Department of Molecular Biosciences, The Wenner-Gren Institute.ORCID iD: 0000-0002-8234-2922
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Newly synthesized proteins are born as unfolded polypeptides emerging from the ribosomal exit tunnel. Folding these nascent chains into native conformations is crucial for protein functionality and preventing off-pathway interactions that trigger misfolding and jeopardize proteome stability. However, achieving the correct 3D structure is a major challenge for nascent chains exposed to high concentrations of molecules in the cytosol. General ribosome-associated chaperones assist co-translational folding of a wide variety of nascent peptides. It is unclear whether this “one-size-fits-all” system ensures the expression of proteins with challenging folding paths or if specialized ribosome-associated chaperones manage the folding of such demanding clients. In Study I, we investigated how the Hsp70 chaperone regulates Hsf1, a transcription factor that mediates the cellular response to proteotoxic stress. We demonstrated that Hsp70 directly binds to Hsf1, keeping it in a latent state under non-stress conditions. Protein misfolding, particularly of newly synthesized proteins, titrates Hsp70 away, activating Hsf1 and inducing the stress response. Thus, Hsp70 availability in response to misfolded proteins is a key regulatory mechanism of Hsf1 activity. In Study II, we identified a specialized ribosome-associated chaperone, Chp1, that assists in the co-translational folding of eEF1A, a highly abundant multidomain GTPase critical for mRNA translation into proteins. Deleting Chp1 leads to rapid proteolysis of eEF1A, widespread protein aggregation, and activation of the Hsf1-mediated stress response. Finally, in Study III, we elucidated how Chp1 assists in eEF1A folding and the ordered sequence of chaperone actions in the eEF1A folding pathway. We found that Chp1 binds to the α3 helix in the switch I region of the eEF1A G-domain, crucial for nucleotide binding, delaying the nucleotide-guided folding of the G-domain. As eEF1A domain II synthesis begins, the substrate is transferred to the downstream chaperone Zpr1 for final maturation. Our results provide insight into the molecular mechanisms of co-translational protein folding and its impact on proteome stability, as well as on the regulation of Hsf1, the central mediator of the response to proteotoxic stress in eukaryotic cells.

Place, publisher, year, edition, pages
Stockholm: Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University , 2025. , p. 59
Keywords [en]
proteostasis, Hsf1, Hsp70, Chp1, specialized ribosome-associated chaperone, eEF1A, G-protein folding
National Category
Molecular Biology
Research subject
Molecular Bioscience
Identifiers
URN: urn:nbn:se:su:diva-238517ISBN: 978-91-8107-094-1 (print)ISBN: 978-91-8107-095-8 (electronic)OAI: oai:DiVA.org:su-238517DiVA, id: diva2:1931531
Public defence
2025-03-14, Vivi Täckholmsalen (Q211) NPQ-huset, Svante Arrhenius väg 20, Stockholm, 09:30 (English)
Opponent
Supervisors
Available from: 2025-02-19 Created: 2025-01-27 Last updated: 2025-01-30Bibliographically approved
List of papers
1. Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1
Open this publication in new window or tab >>Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1
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2019 (English)In: eLIFE, E-ISSN 2050-084X, Vol. 8, article id e47791Article in journal (Refereed) Published
Abstract [en]

Hsf1 is an ancient transcription factor that responds to protein folding stress by inducing the heat-shock response (HSR) that restore perturbed proteostasis. Hsp70 chaperones negatively regulate the activity of Hsf1 via stress-responsive mechanisms that are poorly understood. Here, we have reconstituted budding yeast Hsf1-Hsp70 activation complexes and find that surplus Hsp70 inhibits Hsf1 DNA-binding activity. Hsp70 binds Hsf1 via its canonical substrate binding domain and Hsp70 regulates Hsf1 DNA-binding activity. During heat shock, Hsp70 is out-titrated by misfolded proteins derived from ongoing translation in the cytosol. Pushing the boundaries of the regulatory system unveils a genetic hyperstress program that is triggered by proteostasis collapse and involves an enlarged Hsf1 regulon. The findings demonstrate how an apparently simple chaperone-titration mechanism produces diversified transcriptional output in response to distinct stress loads.

National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:su:diva-175704 (URN)10.7554/eLife.47791 (DOI)000489554600001 ()31552827 (PubMedID)
Available from: 2019-11-13 Created: 2019-11-13 Last updated: 2025-02-20Bibliographically approved
2. Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis
Open this publication in new window or tab >>Chp1 is a dedicated chaperone at the ribosome that safeguards eEF1A biogenesis
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2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, article id 1382Article in journal (Refereed) Published
Abstract [en]

Cotranslational protein folding depends on general chaperones that engage highly diverse nascent chains at the ribosomes. Here we discover a dedicated ribosome-associated chaperone, Chp1, that rewires the cotranslational folding machinery to assist in the challenging biogenesis of abundantly expressed eukaryotic translation elongation factor 1A (eEF1A). Our results indicate that during eEF1A synthesis, Chp1 is recruited to the ribosome with the help of the nascent polypeptide-associated complex (NAC), where it safeguards eEF1A biogenesis. Aberrant eEF1A production in the absence of Chp1 triggers instant proteolysis, widespread protein aggregation, activation of Hsf1 stress transcription and compromises cellular fitness. The expression of pathogenic eEF1A2 variants linked to epileptic-dyskinetic encephalopathy is protected by Chp1. Thus, eEF1A is a difficult-to-fold protein that necessitates a biogenesis pathway starting with dedicated folding factor Chp1 at the ribosome to protect the eukaryotic cell from proteostasis collapse.

Keywords
Chaperones, Mechanisms of disease, Protein aggregation
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:su:diva-232552 (URN)10.1038/s41467-024-45645-w (DOI)001255007500001 ()38360885 (PubMedID)2-s2.0-85185236115 (Scopus ID)
Funder
Swedish Research Council, 2019-04052Swedish Cancer Society, 20 1045
Available from: 2024-08-19 Created: 2024-08-19 Last updated: 2025-02-20Bibliographically approved
3. Early folding of eEF1A: G-domain maturation and ordered chaperone interactions
Open this publication in new window or tab >>Early folding of eEF1A: G-domain maturation and ordered chaperone interactions
(English)Manuscript (preprint) (Other academic)
Keywords
eEF1A, Chp1, protein folding
National Category
Biological Sciences
Research subject
Molecular Biology
Identifiers
urn:nbn:se:su:diva-238516 (URN)
Available from: 2025-01-25 Created: 2025-01-25 Last updated: 2025-01-27

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