Seagrass meadows are vital blue carbon habitats, with sedimentary organic carbon (OC) originating from both the seagrass itself and external sources. In this study, lipid biomarkers (n-alkanes), a well-known proxy for tracing OC sources, were used to indicate seagrass presence in sediment records and to correlate with sedimentary OC in cold-temperate seagrass (Zostera marina) sediments. We calculated a Zostera-ratio (seagrass/algae and terrestrial plants-ratio) using identified seagrass biomass n-alkanes (C15, C17, C19, C21, C23) as a fingerprint for seagrass-derived OC. Based on the presence or absence of seagrass plant remains in sediments, we confirmed an overall significant positive correlation (R2 = 0.49, with significant sites ranging from 0.66 to 0.81; p < 0.001) between the Zostera-ratio and OC in sediment profiles down to 2 m depth. The Zostera-ratio ranged from 0.0006 to 0.35 with higher values indicating seagrass plant material. The findings show that n-alkanes can serve as proxies for both seagrass presence and total OC levels in the sediment.