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Modelling Organometallic Catalysis and Reactions in Cavitands
Stockholm University, Faculty of Science, Department of Chemistry.
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Computational chemistry addresses chemical problems by modelling chemical processes through calculations, and has proven to be an excellent tool for conducting chemical research. This thesis focuses on the modelling of chemical reactions using density functional theory. These chemical reactions are divided into two categories: two reaction mechanisms in organometallic catalysis, and three different binding and/or mechanistic studies involving supramolecular cavitands. The calculations uncover mechanistic details and origins of selectivity which experiments alone could not have explained.

The first organometallic reaction studied concerns the dehydrogenation of amines with (cyclopentadienone)iron carbonyl. The results show a stepwise mechanism involving a rate-limiting hydride transfer followed by a much faster proton transfer. The calculations contribute to a more nuanced understanding of the reaction mechanism in general.  The second reaction studied is the gold-catalysed cycloisomerisation of acetylenic acids to lactones. A detailed mechanism of the cycloisomerisation reaction was calculated, and the origins of the observed regioselectivity and stereoselectivity were uncovered. The results show a strong favouring of a mechanism involving an anti-addition of the carboxylic acid to the alkyne moiety, yielding (Z)-exo-alkylidene γ-lactones in the case of substituted alkynes. 

The first reaction in a supramolecular cavitand considered here is the aforementioned cycloisomerisation of acetylenic acids, this time in a gold-functionalised resorcin[4]arene-based cavitand. The calculations give insights into the structure-activity relationship between the cavitand and several substituted alkyne-acids. Furthermore, the calculations show that the cavitand itself has a modest catalytic power. A binding study of several hydrophilic molecules in a resorcin[4]arene-based cavitand with pyridinyl-benzimidazole panels was conducted. It was found that the water molecules form a hydrogen-bonding network between the panels of the cavitand, as well as on the hydrophilic rim. These interactions explain the high binding affinity of hydrophilic molecules to a hydrophobic cavitand. Finally, the mechanism for the hydrolysis of acetylcholine in a similar resorcin[4]arene-based cavitand was investigated to discern possible catalytic applications. The calculations show that the hydrolysis reaction is associated with prohibitively high barriers inside of the cavitand, and hence the cavitand cannot catalyse this reaction.

Place, publisher, year, edition, pages
Stockholm: Department of Chemistry, Stockholm University , 2025. , p. 55
Keywords [en]
computational chemistry, organometallic catalysis, supramolecular chemistry, cavitand, gold
National Category
Organic Chemistry
Research subject
Organic Chemistry
Identifiers
URN: urn:nbn:se:su:diva-240992ISBN: 978-91-8107-168-9 (print)ISBN: 978-91-8107-169-6 (electronic)OAI: oai:DiVA.org:su-240992DiVA, id: diva2:1945936
Public defence
2025-05-02, Magnéli Hall, Arrhenius Laboratory, Svante Arrhenius väg 12D, Stockholm, 14:00 (English)
Opponent
Supervisors
Available from: 2025-04-09 Created: 2025-03-19 Last updated: 2025-04-01Bibliographically approved
List of papers
1. Mechanistic Studies on Iron-Catalyzed Dehydrogenation of Amines Involving Cyclopentadienone Iron Complexes-Evidence for Stepwise Hydride and Proton Transfer
Open this publication in new window or tab >>Mechanistic Studies on Iron-Catalyzed Dehydrogenation of Amines Involving Cyclopentadienone Iron Complexes-Evidence for Stepwise Hydride and Proton Transfer
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2023 (English)In: ACS Catalysis, E-ISSN 2155-5435, Vol. 13, no 13, p. 8477-8484Article in journal (Refereed) Published
Abstract [en]

The mechanism of dehydrogenation of amines catalyzedby (cyclopentadienone)ironcarbonyl complexes was studied by means of kinetic isotope effect(KIE) measurements, intermediate isolation, and density functionaltheory calculations. The (cyclopentadienone)iron-amine intermediateswere isolated and characterized by H-1 and C-13 NMR spectroscopy as well as X-ray crystallography. The isolatediron-amine complexes are quite stable and undergo a formal beta-hydride elimination to produce imine and iron hydride complexes.The KIEs observed for the iron-catalyzed dehydrogenation of 4-methoxy-N-(4-methylbenzyl)aniline are in accordance with stepwisedehydrogenation. The density functional calculations corroborate astepwise mechanism involving a rate-determining hydride transfer fromamine to iron to yield a metal hydride and an iminium intermediate,followed by a proton transfer from the iminium ion to the oxygen ofthe cyclopentadienone ligand.

Keywords
iron catalysis, dehydrogenation, amines, hydrogen transfer, kinetic isotope effects, DFT calculations
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:su:diva-229560 (URN)10.1021/acscatal.3c01779 (DOI)001004328500001 ()2-s2.0-85163497284 (Scopus ID)
Available from: 2024-05-24 Created: 2024-05-24 Last updated: 2025-03-19Bibliographically approved
2. Computational Study of Gold-Catalyzed Cycloisomerization of Acetylenic Acids
Open this publication in new window or tab >>Computational Study of Gold-Catalyzed Cycloisomerization of Acetylenic Acids
(English)Manuscript (preprint) (Other academic)
National Category
Organic Chemistry
Identifiers
urn:nbn:se:su:diva-240980 (URN)
Available from: 2025-03-19 Created: 2025-03-19 Last updated: 2025-03-19
3. Computational Study of Alkyne‐Acid Cycloisomerization in Gold‐Functionalized Resorcinarene Cavitand
Open this publication in new window or tab >>Computational Study of Alkyne‐Acid Cycloisomerization in Gold‐Functionalized Resorcinarene Cavitand
2025 (English)In: Chemistry - A European Journal, ISSN 0947-6539, E-ISSN 1521-3765, Vol. 31, no 20, article id e202404480Article in journal (Refereed) Published
National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-240985 (URN)10.1002/chem.202404480 (DOI)001440469800001 ()2-s2.0-86000654138 (Scopus ID)
Funder
Swedish Research Council, 2019-04010
Available from: 2025-03-19 Created: 2025-03-19 Last updated: 2025-04-08
4. Recognition of hydrophilic molecules in deep cavitand hosts with water-mediated hydrogen bonds
Open this publication in new window or tab >>Recognition of hydrophilic molecules in deep cavitand hosts with water-mediated hydrogen bonds
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2021 (English)In: Chemical Communications, ISSN 1359-7345, E-ISSN 1364-548X, Vol. 57, no 66, p. 8147-8150Article in journal (Refereed) Published
Abstract [en]

We describe new container host molecules - deep cavitands with benzimidazole walls and ionic feet - to recognize highly hydrophilic guest molecules in water. The aromatic surfaces of the cavity recognize hydrophobic portions of the guest while bound water molecules mediate hydrogen bonding in the complex. Spectroscopic (NMR) evidence indicates slow in/out exchange on the chemical shift timescale and thermodynamic (ITC) methods show large association constants (Ka up to 6 x 10(4) M-1) for complexation of small, water-soluble molecules such as THF and dioxane. Quantum chemical calculations are employed to optimize the host-guest geometries and elucidate the hydrogen bonding patterns responsible for the binding.

National Category
Chemical Sciences
Identifiers
urn:nbn:se:su:diva-197154 (URN)10.1039/d1cc02505h (DOI)000679028000001 ()34312642 (PubMedID)
Available from: 2021-09-27 Created: 2021-09-27 Last updated: 2025-03-19Bibliographically approved
5. On the Hydrolysis of Acetylcholine in a Resorcinarene-Based Cavitand
Open this publication in new window or tab >>On the Hydrolysis of Acetylcholine in a Resorcinarene-Based Cavitand
(English)Manuscript (preprint) (Other academic)
National Category
Organic Chemistry
Identifiers
urn:nbn:se:su:diva-240991 (URN)
Available from: 2025-03-19 Created: 2025-03-19 Last updated: 2025-03-19

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67891011129 of 25
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