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Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0002-8741-8981
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Number of Authors: 322026 (English)In: RSC Chemical Biology, E-ISSN 2633-0679, Vol. 7, no 1, p. 169-181Article in journal (Refereed) Published
Abstract [en]

Bifunctional DNA glycosylases employ an active site lysine or the N-terminus to form a Schiff base with an abasic (AP) site base excision repair intermediate. For 8-oxoguanine DNA glycosylase 1 (OGG1), cleaving this reversible structure is the rate-determining step in the initiation of 8-oxoguanine (8-oxoG) repair in DNA. Evolution has led OGG1 to use a product-assisted catalysis approach, where the excised 8-oxoG acts as a Brønsted base for cleavage of a Schiff base intermediate. However, the physicochemical properties of 8-oxoG significantly limit the inherent enzymatic turnover leading to a weak, cellularly absent, AP lyase activity. We hypothesized that chemical synthesis of purine analogues enables access to complex structures that are suitable as product-like catalysts. Herein, the nucleobase landscape is profiled for its potential to increase OGG1 Schiff base cleavage. 8-Substituted 6-thioguanines emerge as potent and selective scaffolds enabling OGG1 to cleave AP sites opposite any canonical nucleobase by β-elimination. This effectively broadens the enzymatic substrate scope of OGG1, shaping a complete, artificial AP-lyase function. In addition, a second class of compounds, 6-substituted pyrazolo-[3,4-d]-pyrimidines, stimulate OGG1 function at high pH, while thioguanines govern enzymatic control at acidic pH. This enables up to 20-fold increased enzyme turnover and a de novo OGG1 β-elimination in conditions commonly not tolerated. The tool compounds employed here are non-toxic in cells and stimulate the repair of AP sites through a natural, APE1 dependent pathway, as opposed to previously reported β,δ-lyase stimulator TH10785.

Place, publisher, year, edition, pages
2026. Vol. 7, no 1, p. 169-181
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Biochemistry
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URN: urn:nbn:se:su:diva-252601DOI: 10.1039/d4cb00323cISI: 001606683500001Scopus ID: 2-s2.0-105027550859OAI: oai:DiVA.org:su-252601DiVA, id: diva2:2039120
Available from: 2026-02-17 Created: 2026-02-17 Last updated: 2026-03-30Bibliographically approved

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Scaletti, Emma RosePersson Košenina, SaraStenmark, Pål

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