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Increased production of periplasmic proteins in Escherichia coli by directed evolution of the translation initiation region
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics. CloneOpt AB, Sweden.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0001-5216-6975
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.
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Number of Authors: 82020 (English)In: Microbial Cell Factories, E-ISSN 1475-2859, Vol. 19, no 1, article id 85Article in journal (Refereed) Published
Abstract [en]

Background: Recombinant proteins are often engineered with an N-terminal signal peptide, which facilitates their secretion to the oxidising environment of the periplasm (gram-negative bacteria) or the culture supernatant (gram-positive bacteria). A commonly encountered problem is that the signal peptide influences the synthesis and secretion of the recombinant protein in an unpredictable manner. A molecular understanding of this phenomenon is highly sought after, as it could lead to improved methods for producing recombinant proteins in bacterial cell factories.

Results: Herein we demonstrate that signal peptides contribute to an unpredictable translation initiation region. A directed evolution approach that selects a new translation initiation region, whilst leaving the amino acid sequence of the signal peptide unchanged, can increase production levels of secreted recombinant proteins. The approach can increase production of single chain antibody fragments, hormones and other recombinant proteins in the periplasm of E. coli.

Conclusions: The study demonstrates that signal peptide performance is coupled to the efficiency of the translation initiation region.

Place, publisher, year, edition, pages
2020. Vol. 19, no 1, article id 85
Keywords [en]
Protein secretion, Signal peptide, Recombinant protein expression, Bacteria, Translation initiation, Directed evolution
National Category
Environmental Biotechnology
Identifiers
URN: urn:nbn:se:su:diva-181323DOI: 10.1186/s12934-020-01339-8ISI: 000525272100002PubMedID: 32264894OAI: oai:DiVA.org:su-181323DiVA, id: diva2:1431204
Available from: 2020-05-19 Created: 2020-05-19 Last updated: 2024-07-04Bibliographically approved
In thesis
1. Production and folding of proteins in the periplasm of Escherichia coli
Open this publication in new window or tab >>Production and folding of proteins in the periplasm of Escherichia coli
2021 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The Gram-negative bacterium E. coli is the most widely used host for the production of recombinant proteins. Disulfide bond containing recombinant proteins are usually produced in the periplasm of E. coli since in this compartment of the cell - in contrast to the cytoplasm - disulfide bond formation is promoted. To reach the periplasm recombinant proteins have to be translocated across the cytoplasmic membrane by the protein translocation machinery. To obtain sufficient yields of active recombinant protein in the periplasm is always challenging. The Ph.D. studies have aimed at developing strategies to enhance recombinant protein production yields in the periplasm, to better understand what happens when a protein is produced in the periplasm, and to shed light on the protein folding process in the periplasm. It has been shown that evolving translation initiation regions (TIRs) can enhance periplasmic protein production yields of a variety of proteins. Furthermore, it has been shown that the protein translocation machinery can adapt for enhanced periplasmic recombinant protein production. Force profile analysis was used to study co-translational folding of the periplasmic disulfide-bond containing protein alkaline phosphatase (PhoA) in the periplasm. It was shown that folding-induced forces can be transmitted via the nascent chain from the periplasm to the peptidyl transferase center in the ribosome and that PhoA appears to fold co- translationally via disulfide-stabilized folding intermediates. Finally, the S. pneumoniae neuraminidases NanA, NanB, and NanC were produced in E. coli and subsequently isolated. The activity of these neuraminidases was monitored at different pH as well as their oligomeric state was studied.

Place, publisher, year, edition, pages
Stockholm: Department of Biochemistry and Biophysics, Stockholm University, 2021. p. 46
Keywords
Escherichia coli, periplasm, recombinant protein production, disulfide bond containing proteins, translation initiation region, protein translocation machinery, co-translational folding, neuraminidases
National Category
Biochemistry Molecular Biology
Research subject
Biochemistry
Identifiers
urn:nbn:se:su:diva-191529 (URN)978-91-7911-464-0 (ISBN)978-91-7911-465-7 (ISBN)
Public defence
2021-05-14, online via Zoom, public link is available at the department website, Stockholm, 10:00 (English)
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Supervisors
Available from: 2021-04-21 Created: 2021-03-25 Last updated: 2025-02-20Bibliographically approved

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Mirzadeh, KiavashShilling, Patrick J.Elfageih, RageiaCumming, Alister J.Daley, Daniel O.

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