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Insights into the Chemical Reactivity in Acetyl-CoA Synthase
Stockholm University, Faculty of Science, Department of Organic Chemistry.ORCID iD: 0000-0001-7787-1881
Number of Authors: 22020 (English)In: Inorganic Chemistry, ISSN 0020-1669, E-ISSN 1520-510X, Vol. 59, no 20, p. 15167-15179Article in journal (Refereed) Published
Abstract [en]

The biological synthesis of acetyl-coenzyme A (acetyl-CoA), catalyzed by acetyl-CoA synthase (ACS), is of biological significance and chemical interest acting as a source of c energy and carbon. The catalyst contains an unusual hexa-metal cluster with two nickel ions and a [Fe4S4] cluster. DFT calculations have been performed to investigate the ACS reaction mechanism starting from three different oxidation states (+2, +1, and 0) of Ni-p, the nickel proximal to [Fe4S4]. The results indicate that the ACS reaction proceeds first through a methyl radical transfer from cobalamin (CIA) to Ni randomly accompanying with the CO binding. After that, C-C bond formation occurs between the Ni-p bound methyl and CO, forming Ni-p-acetyl. The substrate CoA-S- then binds to Ni-p, allowing C-S bond formation between the Ni-p bound acetyl and CoA-S-. Methyl transfer is rate-limiting with a barrier of similar to 14 kcal/mol, which does not depend on the presence or absence of CO. Both the Ni(p)(2+ )and Ni(p)(1+)states are chemically capable of catalyzing the ACS reaction independent of the state (+2 or +1) of the [Fe4S4] cluster. The [Fe4S4] cluster is not found to affect the steps of methyl transfer and C-C bond formation but may be involved in the C-S bond formation depending on the detailed mechanism chosen. An ACS active site containing a Ni-p (0) state could not be obtained. Optimizations always led to a Ni-p(1+) state coupled with [Fe4S4](1+). The calculations show a comparable activity for Ni-p(1+)/[Fe4S4](1+), Ni-p(1+)/[Fe4S4](2+), and Ni-p(2+)/[Fe4S4](2+). The results here give significant insights into the chemistry of the important ACS reaction.

Place, publisher, year, edition, pages
2020. Vol. 59, no 20, p. 15167-15179
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Chemical Sciences
Identifiers
URN: urn:nbn:se:su:diva-189424DOI: 10.1021/acs.inorgchem.0c02139ISI: 000584351700051PubMedID: 33017144OAI: oai:DiVA.org:su-189424DiVA, id: diva2:1521075
Available from: 2021-01-22 Created: 2021-01-22 Last updated: 2022-02-25Bibliographically approved

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Siegbahn, Per E. M.

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