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Conformational flexibility of the disaccharide & beta;-l-Fucp-(1 & RARR;4)-& alpha;-d-Glcp-OMe as deduced from NMR spectroscopy experiments and computer simulations
Stockholm University, Faculty of Science, Department of Organic Chemistry.ORCID iD: 0000-0003-2097-7268
Stockholm University, Faculty of Science, Department of Organic Chemistry.ORCID iD: 0000-0001-8303-4481
2023 (English)In: Organic and biomolecular chemistry, ISSN 1477-0520, E-ISSN 1477-0539, no 34Article in journal (Refereed) Published
Abstract [en]

Carbohydrates in biological systems are referred to as glycans and modification of their structures is a hallmark indicator of disease. Analysis of the three-dimensional structure forms the basis for further insight into how they function and comparison of crystal structure with solution-state conformation(s) is particularly relevant, which has been performed for the disaccharide & beta;-l-Fucp-(1 & RARR;4)-& alpha;-d-Glcp-OMe. In water solution the conformational space at the glycosidic linkage between the two sugar residues is identified from molecular dynamics (MD) simulations as having a low-energy exo-syn conformation, deviating somewhat from the solid-state conformation, and two anti-conformational states, i.e., anti-& phi; and anti-& psi;, indicating flexibility at the glycosidic linkage. NMR data were obtained from 1D H-1,H-1-NOESY and STEP-NOESY experiments, measurement of transglycosidic (3)J(CH) coupling constants and NMR spin-simulation. The free energy profile of the & omega; torsion angle computed from MD simulation was in excellent agreement with the rotamer distribution from NMR experiment being for gt:gg:tg 38 : 53 : 9, respectively, with a proposed inter-residue O5 & PRIME;MIDLINE HORIZONTAL ELLIPSISHO6 hydrogen bond being predominant in the gg rotamer. Quantum mechanics methodology was used to calculate transglycosidic NMR (3)J(CH) coupling constants, averaged over a conformational ensemble of structures representing various rotamers of exocyclic groups, in good to excellent agreement with Karplus-type relationships previously developed. Furthermore, H-1 and C-13 NMR chemical shifts were calculated using the same methodology and were found to be in excellent agreement with experimental data.

Place, publisher, year, edition, pages
2023. no 34
National Category
Chemical Sciences
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URN: urn:nbn:se:su:diva-221324DOI: 10.1039/d3ob01153dISI: 001048518400001PubMedID: 37584331Scopus ID: 2-s2.0-85169173471OAI: oai:DiVA.org:su-221324DiVA, id: diva2:1798609
Available from: 2023-09-19 Created: 2023-09-19 Last updated: 2023-09-19Bibliographically approved

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Angles d'Ortoli, ThibaultWidmalm, Göran

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