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Mechanism of proton release during water oxidation in Photosystem II
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0001-8137-495x
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0003-1868-2022
Stockholm University, Faculty of Science, Department of Biochemistry and Biophysics.ORCID iD: 0000-0003-4464-6324
2024 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 121, no 52, article id e2413396121Article in journal (Refereed) Published
Abstract [en]

Photosystem II (PSII) catalyzes light-driven water oxidation that releases dioxygen into our atmosphere and provides the electrons needed for the synthesis of biomass. The catalysis occurs in the oxygen-evolving oxo-manganese-calcium (Mn4O5Ca) cluster that drives the oxidation and deprotonation of substrate water molecules leading to the O2 formation. However, despite recent advances, the mechanism of these reactions remains unclear and much debated. Here, we show that the light-driven Tyr161D1 (Yz) oxidation adjacent to the Mn4O5Ca cluster, decreases the barrier for proton transfer from the putative substrate water molecule (W3/Wx) to Glu310D2, accessible to the luminal bulk. By combining hybrid quantum/classical (QM/MM) free energy calculations with atomistic molecular dynamics simulations, we probe the energetics of the proton transfer along the Cl1 pathway. We demonstrate that the proton transfer occurs via water molecules and a cluster of conserved carboxylates, driven by redox-triggered electric fields directed along the pathway. Glu65D1 establishes a local molecular gate that controls the proton transfer to the luminal bulk, while Glu312D2 acts as a local proton storage site. The identified gating region could be important in preventing backflow of protons to the Mn4O5Ca cluster. The structural changes, derived here based on the dark-state PSII structure, strongly support recent time-resolved X-ray free electron laser data of the S3 → S4 transition (Bhowmick et al. Nature 617, 2023) and reveal the mechanistic basis underlying deprotonation of the substrate water molecules. Our findings provide insight into the water oxidation mechanism of PSII and show how the interplay between redox-triggered electric fields, ion-pairs, and hydration effects control proton transport reactions.

Place, publisher, year, edition, pages
2024. Vol. 121, no 52, article id e2413396121
Keywords [en]
photosynthesis, water splitting, bioenergetics, multiscale, quantum/classical (QM/MM) simulations
National Category
Biophysics
Research subject
Biophysics
Identifiers
URN: urn:nbn:se:su:diva-232563DOI: 10.1073/pnas.2413396121ISI: 001386056200005PubMedID: 39700151Scopus ID: 2-s2.0-85213439818OAI: oai:DiVA.org:su-232563DiVA, id: diva2:1890498
Available from: 2024-08-19 Created: 2024-08-19 Last updated: 2025-03-11Bibliographically approved
In thesis
1. Mechanistic Insight Into Photosystem II: From Light-Capture to Protonation Dynamics Explored by Multi-Scale Simulations
Open this publication in new window or tab >>Mechanistic Insight Into Photosystem II: From Light-Capture to Protonation Dynamics Explored by Multi-Scale Simulations
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Oxygen powers aerobic life. Its production on Earth relies on the cellular process of photosynthesis, in which the energy of sunlight is converted into an electrochemical proton gradient, driving the synthesis of biomass and plant growth. At the heart of photosynthesis lies photosystem II, an enzyme which catalyzes the oxidation of water to molecular oxygen. Following photon absorption, chlorophylls funnel light energy to the reaction center, initiating charge separation. This triggers rapid electron transfers, ultimately resulting in the reduction of quinone and the oxidation of water to molecular oxygen. The molecular principles of photosystem II are investigated in this thesis by combining atomistic molecular dynamics with hybrid quantum/classical simulations. We identify a regulatory role of bicarbonate in preventing the formation of harmful singlet oxygen, elucidate proton transfer pathways and their dependency on S state dynamics, and characterize water networks essential for efficient proton translocation. Additionally, our work on far-red light-adapted photosystem II highlights how specific chlorophyll substitutions expand the spectral range of photosynthesis, facilitating efficient light absorption and energy transfer under scarce light conditions.

Place, publisher, year, edition, pages
Stockholm: Department of Biochemistry and Biophysics, Stockholm University, 2024. p. 59
Keywords
Bioenergetics, Multiscale Simulations, Photosynthesis, Water Oxidation, Proton Transfer, Photoexcitation
National Category
Biophysics Biochemistry Molecular Biology
Research subject
Biophysics
Identifiers
urn:nbn:se:su:diva-232566 (URN)978-91-8014-891-7 (ISBN)978-91-8014-892-4 (ISBN)
Public defence
2024-10-07, Magnélisalen, Kemiska övningslaboratoriet, Svante Arrhenius Väg 16B and online via Zoom, public link is available at the department website, Stockholm, 14:00 (English)
Opponent
Supervisors
Available from: 2024-09-12 Created: 2024-08-19 Last updated: 2025-02-20Bibliographically approved

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Allgöwer, FriederikePöverlein, Maximilian C.Kaila, Ville R. I.

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